Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08255

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS08250 and AMB_RS08255 are separated by 127 nucleotidesAMB_RS08255 and AMB_RS08260 are separated by 13 nucleotidesAMB_RS08260 and AMB_RS08265 are separated by 291 nucleotides AMB_RS08250: AMB_RS08250 - site-specific DNA methylase, at 1,769,053 to 1,769,883 _RS08250 AMB_RS08255: AMB_RS08255 - hypothetical protein, at 1,770,011 to 1,770,403 _RS08255 AMB_RS08260: AMB_RS08260 - hypothetical protein, at 1,770,417 to 1,770,614 _RS08260 AMB_RS08265: AMB_RS08265 - hypothetical protein, at 1,770,906 to 1,771,595 _RS08265 Position (kb) 1770 1771Strain fitness (log2 ratio) -3 -2 -1 0 1at 1769.124 kb on + strandat 1769.124 kb on + strandat 1769.125 kb on - strandat 1769.125 kb on - strandat 1769.125 kb on - strandat 1769.225 kb on + strand, within AMB_RS08250at 1769.226 kb on - strand, within AMB_RS08250at 1769.253 kb on + strand, within AMB_RS08250at 1769.253 kb on + strand, within AMB_RS08250at 1769.254 kb on - strand, within AMB_RS08250at 1769.254 kb on - strand, within AMB_RS08250at 1769.255 kb on + strand, within AMB_RS08250at 1769.255 kb on + strand, within AMB_RS08250at 1769.255 kb on + strand, within AMB_RS08250at 1769.255 kb on + strand, within AMB_RS08250at 1769.256 kb on - strand, within AMB_RS08250at 1769.256 kb on - strand, within AMB_RS08250at 1769.256 kb on - strand, within AMB_RS08250at 1769.256 kb on - strand, within AMB_RS08250at 1769.345 kb on + strand, within AMB_RS08250at 1769.345 kb on + strand, within AMB_RS08250at 1769.346 kb on - strand, within AMB_RS08250at 1769.346 kb on - strand, within AMB_RS08250at 1769.346 kb on - strand, within AMB_RS08250at 1769.346 kb on - strand, within AMB_RS08250at 1769.375 kb on + strand, within AMB_RS08250at 1769.391 kb on - strand, within AMB_RS08250at 1769.392 kb on + strand, within AMB_RS08250at 1769.392 kb on + strand, within AMB_RS08250at 1769.393 kb on - strand, within AMB_RS08250at 1769.393 kb on - strand, within AMB_RS08250at 1769.443 kb on + strand, within AMB_RS08250at 1769.443 kb on + strand, within AMB_RS08250at 1769.443 kb on + strand, within AMB_RS08250at 1769.444 kb on - strand, within AMB_RS08250at 1769.540 kb on + strand, within AMB_RS08250at 1769.541 kb on - strand, within AMB_RS08250at 1769.597 kb on + strand, within AMB_RS08250at 1769.597 kb on + strand, within AMB_RS08250at 1769.597 kb on + strand, within AMB_RS08250at 1769.597 kb on + strand, within AMB_RS08250at 1769.597 kb on + strand, within AMB_RS08250at 1769.598 kb on - strand, within AMB_RS08250at 1769.598 kb on - strand, within AMB_RS08250at 1769.598 kb on - strand, within AMB_RS08250at 1769.603 kb on + strand, within AMB_RS08250at 1769.603 kb on + strand, within AMB_RS08250at 1769.603 kb on + strand, within AMB_RS08250at 1769.604 kb on - strand, within AMB_RS08250at 1769.604 kb on - strand, within AMB_RS08250at 1769.604 kb on - strand, within AMB_RS08250at 1769.621 kb on + strand, within AMB_RS08250at 1769.622 kb on - strand, within AMB_RS08250at 1769.872 kb on - strandat 1769.872 kb on - strandat 1769.909 kb on + strandat 1769.937 kb on + strandat 1770.110 kb on - strand, within AMB_RS08255at 1770.343 kb on + strand, within AMB_RS08255at 1770.344 kb on - strand, within AMB_RS08255at 1770.406 kb on - strandat 1770.406 kb on - strandat 1770.406 kb on - strandat 1770.592 kb on - strand, within AMB_RS08260at 1770.826 kb on - strandat 1770.920 kb on + strandat 1771.087 kb on - strand, within AMB_RS08265at 1771.087 kb on - strand, within AMB_RS08265at 1771.205 kb on - strand, within AMB_RS08265at 1771.205 kb on - strand, within AMB_RS08265

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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1,769,124 + -0.6
1,769,124 + -1.6
1,769,125 - -0.6
1,769,125 - +0.4
1,769,125 - -0.6
1,769,225 + AMB_RS08250 0.21 +0.4
1,769,226 - AMB_RS08250 0.21 -2.2
1,769,253 + AMB_RS08250 0.24 -0.2
1,769,253 + AMB_RS08250 0.24 -0.6
1,769,254 - AMB_RS08250 0.24 +0.4
1,769,254 - AMB_RS08250 0.24 -1.6
1,769,255 + AMB_RS08250 0.24 -1.2
1,769,255 + AMB_RS08250 0.24 -1.0
1,769,255 + AMB_RS08250 0.24 -0.6
1,769,255 + AMB_RS08250 0.24 -0.1
1,769,256 - AMB_RS08250 0.24 +0.0
1,769,256 - AMB_RS08250 0.24 -0.6
1,769,256 - AMB_RS08250 0.24 -2.0
1,769,256 - AMB_RS08250 0.24 -2.6
1,769,345 + AMB_RS08250 0.35 -1.6
1,769,345 + AMB_RS08250 0.35 -0.4
1,769,346 - AMB_RS08250 0.35 -3.3
1,769,346 - AMB_RS08250 0.35 -0.6
1,769,346 - AMB_RS08250 0.35 +0.4
1,769,346 - AMB_RS08250 0.35 -2.0
1,769,375 + AMB_RS08250 0.39 +0.4
1,769,391 - AMB_RS08250 0.41 +0.4
1,769,392 + AMB_RS08250 0.41 -0.2
1,769,392 + AMB_RS08250 0.41 -2.2
1,769,393 - AMB_RS08250 0.41 -3.4
1,769,393 - AMB_RS08250 0.41 -2.2
1,769,443 + AMB_RS08250 0.47 -0.1
1,769,443 + AMB_RS08250 0.47 -1.2
1,769,443 + AMB_RS08250 0.47 +0.4
1,769,444 - AMB_RS08250 0.47 +0.4
1,769,540 + AMB_RS08250 0.59 -3.4
1,769,541 - AMB_RS08250 0.59 +1.4
1,769,597 + AMB_RS08250 0.65 -1.4
1,769,597 + AMB_RS08250 0.65 -0.0
1,769,597 + AMB_RS08250 0.65 -0.1
1,769,597 + AMB_RS08250 0.65 +0.4
1,769,597 + AMB_RS08250 0.65 -0.0
1,769,598 - AMB_RS08250 0.66 -2.0
1,769,598 - AMB_RS08250 0.66 -0.9
1,769,598 - AMB_RS08250 0.66 +1.4
1,769,603 + AMB_RS08250 0.66 -1.6
1,769,603 + AMB_RS08250 0.66 +0.4
1,769,603 + AMB_RS08250 0.66 -1.6
1,769,604 - AMB_RS08250 0.66 -0.6
1,769,604 - AMB_RS08250 0.66 -1.2
1,769,604 - AMB_RS08250 0.66 -0.6
1,769,621 + AMB_RS08250 0.68 +0.4
1,769,622 - AMB_RS08250 0.68 -1.6
1,769,872 - -2.0
1,769,872 - -3.1
1,769,909 + -3.3
1,769,937 + +0.4
1,770,110 - AMB_RS08255 0.25 -0.6
1,770,343 + AMB_RS08255 0.84 -3.0
1,770,344 - AMB_RS08255 0.85 -2.2
1,770,406 - +0.4
1,770,406 - -0.6
1,770,406 - +0.1
1,770,592 - AMB_RS08260 0.88 -2.4
1,770,826 - +0.4
1,770,920 + -2.2
1,771,087 - AMB_RS08265 0.26 -2.0
1,771,087 - AMB_RS08265 0.26 +0.4
1,771,205 - AMB_RS08265 0.43 -2.0
1,771,205 - AMB_RS08265 0.43 +0.9

Or see this region's nucleotide sequence