Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS08015 and AMB_RS08020 are separated by 162 nucleotides AMB_RS08020 and AMB_RS08025 are separated by 175 nucleotides AMB_RS08025 and AMB_RS08030 are separated by 164 nucleotides
AMB_RS08015: AMB_RS08015 - Holliday junction resolvase RuvX, at 1,717,876 to 1,718,343
_RS08015
AMB_RS08020: AMB_RS08020 - hypothetical protein, at 1,718,506 to 1,718,982
_RS08020
AMB_RS08025: AMB_RS08025 - chorismate synthase, at 1,719,158 to 1,720,246
_RS08025
AMB_RS08030: AMB_RS08030 - enoyl-[acyl-carrier-protein] reductase FabI, at 1,720,411 to 1,721,229
_RS08030
Position (kb) 1719
1720
1721 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1718.512 kb on - strand at 1718.512 kb on - strand at 1718.512 kb on - strand at 1718.713 kb on + strand, within AMB_RS08020 at 1718.713 kb on + strand, within AMB_RS08020 at 1718.714 kb on - strand, within AMB_RS08020 at 1718.752 kb on + strand, within AMB_RS08020 at 1718.752 kb on + strand, within AMB_RS08020 at 1718.752 kb on + strand, within AMB_RS08020 at 1718.753 kb on - strand, within AMB_RS08020 at 1718.753 kb on - strand, within AMB_RS08020 at 1718.753 kb on - strand, within AMB_RS08020 at 1718.753 kb on - strand, within AMB_RS08020 at 1718.753 kb on - strand, within AMB_RS08020 at 1718.753 kb on - strand, within AMB_RS08020 at 1718.753 kb on - strand, within AMB_RS08020 at 1718.817 kb on + strand, within AMB_RS08020 at 1718.818 kb on - strand, within AMB_RS08020 at 1718.903 kb on - strand, within AMB_RS08020 at 1718.903 kb on - strand, within AMB_RS08020
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 1,718,512 - +0.4 1,718,512 - -0.6 1,718,512 - -1.2 1,718,713 + AMB_RS08020 0.43 +0.4 1,718,713 + AMB_RS08020 0.43 -2.0 1,718,714 - AMB_RS08020 0.44 -0.6 1,718,752 + AMB_RS08020 0.52 -4.3 1,718,752 + AMB_RS08020 0.52 -0.4 1,718,752 + AMB_RS08020 0.52 -1.2 1,718,753 - AMB_RS08020 0.52 -2.3 1,718,753 - AMB_RS08020 0.52 -2.6 1,718,753 - AMB_RS08020 0.52 -2.9 1,718,753 - AMB_RS08020 0.52 -2.4 1,718,753 - AMB_RS08020 0.52 +0.4 1,718,753 - AMB_RS08020 0.52 -2.0 1,718,753 - AMB_RS08020 0.52 -0.4 1,718,817 + AMB_RS08020 0.65 -2.0 1,718,818 - AMB_RS08020 0.65 -2.6 1,718,903 - AMB_RS08020 0.83 -1.0 1,718,903 - AMB_RS08020 0.83 -2.8
Or see this region's nucleotide sequence