Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07920

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07915 and AMB_RS07920 are separated by 180 nucleotidesAMB_RS07920 and AMB_RS07925 are separated by 100 nucleotides AMB_RS07915: AMB_RS07915 - hypothetical protein, at 1,698,742 to 1,699,971 _RS07915 AMB_RS07920: AMB_RS07920 - N-acetyltransferase, at 1,700,152 to 1,700,670 _RS07920 AMB_RS07925: AMB_RS07925 - nitrogenase molybdenum-iron protein subunit beta, at 1,700,771 to 1,702,306 _RS07925 Position (kb) 1700 1701Strain fitness (log2 ratio) -3 -2 -1 0 1at 1699.214 kb on + strand, within AMB_RS07915at 1699.214 kb on + strand, within AMB_RS07915at 1699.226 kb on + strand, within AMB_RS07915at 1699.227 kb on - strand, within AMB_RS07915at 1699.596 kb on - strand, within AMB_RS07915at 1699.596 kb on - strand, within AMB_RS07915at 1699.716 kb on - strand, within AMB_RS07915at 1699.716 kb on - strand, within AMB_RS07915at 1699.748 kb on + strand, within AMB_RS07915at 1699.748 kb on + strand, within AMB_RS07915at 1699.748 kb on + strand, within AMB_RS07915at 1699.748 kb on + strand, within AMB_RS07915at 1699.749 kb on - strand, within AMB_RS07915at 1699.769 kb on + strand, within AMB_RS07915at 1699.769 kb on + strand, within AMB_RS07915at 1699.769 kb on + strand, within AMB_RS07915at 1699.769 kb on + strand, within AMB_RS07915at 1699.769 kb on + strand, within AMB_RS07915at 1699.769 kb on + strand, within AMB_RS07915at 1699.769 kb on + strand, within AMB_RS07915at 1699.769 kb on + strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.770 kb on - strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.773 kb on - strand, within AMB_RS07915at 1699.773 kb on - strand, within AMB_RS07915at 1699.773 kb on - strand, within AMB_RS07915at 1699.854 kb on - strandat 1699.854 kb on - strandat 1700.085 kb on - strandat 1700.121 kb on + strandat 1700.356 kb on + strand, within AMB_RS07920at 1700.356 kb on + strand, within AMB_RS07920at 1700.356 kb on + strand, within AMB_RS07920at 1700.357 kb on - strand, within AMB_RS07920at 1700.365 kb on + strand, within AMB_RS07920at 1700.366 kb on - strand, within AMB_RS07920at 1700.366 kb on - strand, within AMB_RS07920at 1700.787 kb on + strandat 1700.788 kb on - strandat 1700.955 kb on + strand, within AMB_RS07925at 1700.955 kb on + strand, within AMB_RS07925at 1700.955 kb on + strand, within AMB_RS07925at 1700.955 kb on + strand, within AMB_RS07925at 1700.956 kb on - strand, within AMB_RS07925at 1700.956 kb on - strand, within AMB_RS07925at 1700.956 kb on - strand, within AMB_RS07925at 1700.956 kb on - strand, within AMB_RS07925at 1700.956 kb on - strand, within AMB_RS07925at 1700.964 kb on + strand, within AMB_RS07925at 1701.199 kb on + strand, within AMB_RS07925at 1701.351 kb on + strand, within AMB_RS07925at 1701.352 kb on - strand, within AMB_RS07925at 1701.352 kb on - strand, within AMB_RS07925at 1701.390 kb on + strand, within AMB_RS07925at 1701.390 kb on + strand, within AMB_RS07925at 1701.390 kb on + strand, within AMB_RS07925at 1701.390 kb on + strand, within AMB_RS07925at 1701.391 kb on - strand, within AMB_RS07925at 1701.391 kb on - strand, within AMB_RS07925at 1701.391 kb on - strand, within AMB_RS07925at 1701.414 kb on + strand, within AMB_RS07925at 1701.414 kb on + strand, within AMB_RS07925at 1701.414 kb on + strand, within AMB_RS07925at 1701.414 kb on + strand, within AMB_RS07925at 1701.415 kb on - strand, within AMB_RS07925at 1701.415 kb on - strand, within AMB_RS07925at 1701.415 kb on - strand, within AMB_RS07925at 1701.415 kb on - strand, within AMB_RS07925at 1701.486 kb on + strand, within AMB_RS07925at 1701.486 kb on + strand, within AMB_RS07925at 1701.486 kb on + strand, within AMB_RS07925at 1701.487 kb on - strand, within AMB_RS07925at 1701.487 kb on - strand, within AMB_RS07925at 1701.487 kb on - strand, within AMB_RS07925at 1701.487 kb on - strand, within AMB_RS07925at 1701.487 kb on - strand, within AMB_RS07925at 1701.549 kb on + strand, within AMB_RS07925at 1701.549 kb on + strand, within AMB_RS07925at 1701.549 kb on + strand, within AMB_RS07925at 1701.550 kb on - strand, within AMB_RS07925at 1701.550 kb on - strand, within AMB_RS07925at 1701.550 kb on - strand, within AMB_RS07925

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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1,699,214 + AMB_RS07915 0.38 +0.4
1,699,214 + AMB_RS07915 0.38 +0.4
1,699,226 + AMB_RS07915 0.39 +0.4
1,699,227 - AMB_RS07915 0.39 +0.4
1,699,596 - AMB_RS07915 0.69 -0.6
1,699,596 - AMB_RS07915 0.69 +0.4
1,699,716 - AMB_RS07915 0.79 -0.6
1,699,716 - AMB_RS07915 0.79 -1.6
1,699,748 + AMB_RS07915 0.82 -2.2
1,699,748 + AMB_RS07915 0.82 -1.6
1,699,748 + AMB_RS07915 0.82 -1.2
1,699,748 + AMB_RS07915 0.82 -1.0
1,699,749 - AMB_RS07915 0.82 +0.1
1,699,769 + AMB_RS07915 0.83 -0.6
1,699,769 + AMB_RS07915 0.83 -2.0
1,699,769 + AMB_RS07915 0.83 +0.4
1,699,769 + AMB_RS07915 0.83 -1.2
1,699,769 + AMB_RS07915 0.83 +0.4
1,699,769 + AMB_RS07915 0.83 +0.4
1,699,769 + AMB_RS07915 0.83 -0.6
1,699,769 + AMB_RS07915 0.83 -0.5
1,699,770 - AMB_RS07915 0.84 +0.0
1,699,770 - AMB_RS07915 0.84 -1.2
1,699,770 - AMB_RS07915 0.84 -0.2
1,699,770 - AMB_RS07915 0.84 -2.8
1,699,770 - AMB_RS07915 0.84 -1.2
1,699,770 - AMB_RS07915 0.84 -1.6
1,699,770 - AMB_RS07915 0.84 -1.2
1,699,770 - AMB_RS07915 0.84 +0.4
1,699,770 - AMB_RS07915 0.84 -1.6
1,699,772 + AMB_RS07915 0.84 -2.6
1,699,772 + AMB_RS07915 0.84 +0.4
1,699,772 + AMB_RS07915 0.84 +0.4
1,699,772 + AMB_RS07915 0.84 -1.2
1,699,772 + AMB_RS07915 0.84 +0.4
1,699,772 + AMB_RS07915 0.84 -0.6
1,699,772 + AMB_RS07915 0.84 +0.0
1,699,772 + AMB_RS07915 0.84 -0.6
1,699,772 + AMB_RS07915 0.84 +0.4
1,699,773 - AMB_RS07915 0.84 -1.6
1,699,773 - AMB_RS07915 0.84 -0.6
1,699,773 - AMB_RS07915 0.84 +1.0
1,699,854 - -0.6
1,699,854 - -1.6
1,700,085 - -1.2
1,700,121 + -0.5
1,700,356 + AMB_RS07920 0.39 -1.2
1,700,356 + AMB_RS07920 0.39 -3.7
1,700,356 + AMB_RS07920 0.39 -1.6
1,700,357 - AMB_RS07920 0.39 -1.6
1,700,365 + AMB_RS07920 0.41 -3.3
1,700,366 - AMB_RS07920 0.41 -1.6
1,700,366 - AMB_RS07920 0.41 -0.6
1,700,787 + -1.6
1,700,788 - -0.6
1,700,955 + AMB_RS07925 0.12 -0.1
1,700,955 + AMB_RS07925 0.12 -0.3
1,700,955 + AMB_RS07925 0.12 -0.6
1,700,955 + AMB_RS07925 0.12 -1.6
1,700,956 - AMB_RS07925 0.12 -0.3
1,700,956 - AMB_RS07925 0.12 +0.4
1,700,956 - AMB_RS07925 0.12 -2.6
1,700,956 - AMB_RS07925 0.12 +0.1
1,700,956 - AMB_RS07925 0.12 -2.0
1,700,964 + AMB_RS07925 0.13 -0.6
1,701,199 + AMB_RS07925 0.28 -3.2
1,701,351 + AMB_RS07925 0.38 -0.5
1,701,352 - AMB_RS07925 0.38 -1.2
1,701,352 - AMB_RS07925 0.38 +0.4
1,701,390 + AMB_RS07925 0.40 -1.2
1,701,390 + AMB_RS07925 0.40 -0.6
1,701,390 + AMB_RS07925 0.40 -2.0
1,701,390 + AMB_RS07925 0.40 -0.6
1,701,391 - AMB_RS07925 0.40 -2.6
1,701,391 - AMB_RS07925 0.40 -2.4
1,701,391 - AMB_RS07925 0.40 +0.4
1,701,414 + AMB_RS07925 0.42 -0.6
1,701,414 + AMB_RS07925 0.42 -0.6
1,701,414 + AMB_RS07925 0.42 -3.4
1,701,414 + AMB_RS07925 0.42 -2.0
1,701,415 - AMB_RS07925 0.42 +0.4
1,701,415 - AMB_RS07925 0.42 -2.4
1,701,415 - AMB_RS07925 0.42 +0.4
1,701,415 - AMB_RS07925 0.42 -2.8
1,701,486 + AMB_RS07925 0.47 +0.4
1,701,486 + AMB_RS07925 0.47 -0.6
1,701,486 + AMB_RS07925 0.47 -1.2
1,701,487 - AMB_RS07925 0.47 +0.4
1,701,487 - AMB_RS07925 0.47 -2.8
1,701,487 - AMB_RS07925 0.47 -0.6
1,701,487 - AMB_RS07925 0.47 -0.6
1,701,487 - AMB_RS07925 0.47 -1.2
1,701,549 + AMB_RS07925 0.51 +0.4
1,701,549 + AMB_RS07925 0.51 -2.8
1,701,549 + AMB_RS07925 0.51 -0.5
1,701,550 - AMB_RS07925 0.51 -1.6
1,701,550 - AMB_RS07925 0.51 -2.0
1,701,550 - AMB_RS07925 0.51 +0.4

Or see this region's nucleotide sequence