Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07245

Experiment: an_mag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS07240 and AMB_RS07245 are separated by 83 nucleotidesAMB_RS07245 and AMB_RS23275 are separated by 58 nucleotides AMB_RS07240: AMB_RS07240 - PAS domain-containing sensor histidine kinase, at 1,561,916 to 1,563,496 _RS07240 AMB_RS07245: AMB_RS07245 - surface lipoprotein, at 1,563,580 to 1,564,482 _RS07245 AMB_RS23275: AMB_RS23275 - class I SAM-dependent methyltransferase, at 1,564,541 to 1,565,485 _RS23275 Position (kb) 1563 1564 1565Strain fitness (log2 ratio) -3 -2 -1 0 1at 1562.618 kb on + strand, within AMB_RS07240at 1562.618 kb on + strand, within AMB_RS07240at 1562.618 kb on + strand, within AMB_RS07240at 1562.619 kb on - strand, within AMB_RS07240at 1562.619 kb on - strand, within AMB_RS07240at 1562.696 kb on + strand, within AMB_RS07240at 1562.697 kb on - strand, within AMB_RS07240at 1562.773 kb on + strand, within AMB_RS07240at 1562.773 kb on + strand, within AMB_RS07240at 1562.774 kb on - strand, within AMB_RS07240at 1562.774 kb on - strand, within AMB_RS07240at 1562.774 kb on - strand, within AMB_RS07240at 1562.906 kb on + strand, within AMB_RS07240at 1562.906 kb on + strand, within AMB_RS07240at 1562.906 kb on + strand, within AMB_RS07240at 1562.906 kb on + strand, within AMB_RS07240at 1563.209 kb on + strand, within AMB_RS07240at 1563.316 kb on + strand, within AMB_RS07240at 1563.332 kb on + strand, within AMB_RS07240at 1563.333 kb on - strand, within AMB_RS07240at 1563.391 kb on - strandat 1563.515 kb on + strandat 1563.518 kb on + strandat 1563.518 kb on + strandat 1563.721 kb on + strand, within AMB_RS07245at 1563.722 kb on - strand, within AMB_RS07245at 1563.775 kb on + strand, within AMB_RS07245at 1563.816 kb on + strand, within AMB_RS07245at 1563.817 kb on - strand, within AMB_RS07245at 1563.846 kb on + strand, within AMB_RS07245at 1564.034 kb on - strand, within AMB_RS07245at 1564.034 kb on - strand, within AMB_RS07245at 1564.438 kb on - strandat 1564.438 kb on - strandat 1564.443 kb on + strandat 1564.443 kb on + strandat 1564.878 kb on + strand, within AMB_RS23275at 1564.887 kb on + strand, within AMB_RS23275at 1564.888 kb on - strand, within AMB_RS23275at 1564.888 kb on - strand, within AMB_RS23275at 1564.929 kb on + strand, within AMB_RS23275at 1565.052 kb on + strand, within AMB_RS23275at 1565.052 kb on + strand, within AMB_RS23275at 1565.052 kb on + strand, within AMB_RS23275at 1565.053 kb on - strand, within AMB_RS23275at 1565.055 kb on + strand, within AMB_RS23275at 1565.251 kb on + strand, within AMB_RS23275at 1565.252 kb on - strand, within AMB_RS23275at 1565.257 kb on - strand, within AMB_RS23275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
remove
1,562,618 + AMB_RS07240 0.44 -0.1
1,562,618 + AMB_RS07240 0.44 -1.2
1,562,618 + AMB_RS07240 0.44 -1.2
1,562,619 - AMB_RS07240 0.44 -0.6
1,562,619 - AMB_RS07240 0.44 -2.2
1,562,696 + AMB_RS07240 0.49 -0.3
1,562,697 - AMB_RS07240 0.49 -1.4
1,562,773 + AMB_RS07240 0.54 -0.1
1,562,773 + AMB_RS07240 0.54 -0.7
1,562,774 - AMB_RS07240 0.54 -1.2
1,562,774 - AMB_RS07240 0.54 -1.2
1,562,774 - AMB_RS07240 0.54 -0.5
1,562,906 + AMB_RS07240 0.63 -1.1
1,562,906 + AMB_RS07240 0.63 -0.9
1,562,906 + AMB_RS07240 0.63 -0.8
1,562,906 + AMB_RS07240 0.63 -2.4
1,563,209 + AMB_RS07240 0.82 -1.9
1,563,316 + AMB_RS07240 0.89 -1.2
1,563,332 + AMB_RS07240 0.90 -2.6
1,563,333 - AMB_RS07240 0.90 +0.4
1,563,391 - -1.2
1,563,515 + +0.4
1,563,518 + +0.4
1,563,518 + -0.6
1,563,721 + AMB_RS07245 0.16 -1.2
1,563,722 - AMB_RS07245 0.16 -3.2
1,563,775 + AMB_RS07245 0.22 +0.4
1,563,816 + AMB_RS07245 0.26 -1.2
1,563,817 - AMB_RS07245 0.26 -0.6
1,563,846 + AMB_RS07245 0.29 +0.4
1,564,034 - AMB_RS07245 0.50 -1.2
1,564,034 - AMB_RS07245 0.50 -2.4
1,564,438 - -2.4
1,564,438 - -1.9
1,564,443 + +0.4
1,564,443 + +0.9
1,564,878 + AMB_RS23275 0.36 -0.6
1,564,887 + AMB_RS23275 0.37 -1.2
1,564,888 - AMB_RS23275 0.37 -1.2
1,564,888 - AMB_RS23275 0.37 -1.2
1,564,929 + AMB_RS23275 0.41 -1.9
1,565,052 + AMB_RS23275 0.54 +0.4
1,565,052 + AMB_RS23275 0.54 -1.9
1,565,052 + AMB_RS23275 0.54 +0.4
1,565,053 - AMB_RS23275 0.54 -0.3
1,565,055 + AMB_RS23275 0.54 -2.4
1,565,251 + AMB_RS23275 0.75 -2.6
1,565,252 - AMB_RS23275 0.75 -1.2
1,565,257 - AMB_RS23275 0.76 +0.4

Or see this region's nucleotide sequence