Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS06830 and AMB_RS06835 are separated by 0 nucleotides AMB_RS06835 and AMB_RS06840 are separated by 124 nucleotides AMB_RS06840 and AMB_RS06845 are separated by 177 nucleotides
AMB_RS06830: AMB_RS06830 - DNA-binding response regulator, at 1,462,925 to 1,463,554
_RS06830
AMB_RS06835: AMB_RS06835 - hypothetical protein, at 1,463,555 to 1,464,061
_RS06835
AMB_RS06840: AMB_RS06840 - hypothetical protein, at 1,464,186 to 1,464,572
_RS06840
AMB_RS06845: AMB_RS06845 - hypothetical protein, at 1,464,750 to 1,465,664
_RS06845
Position (kb) 1464
1465 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1463.294 kb on + strand, within AMB_RS06830 at 1463.294 kb on + strand, within AMB_RS06830 at 1463.295 kb on - strand, within AMB_RS06830 at 1463.295 kb on - strand, within AMB_RS06830 at 1463.295 kb on - strand, within AMB_RS06830 at 1463.295 kb on - strand, within AMB_RS06830 at 1463.333 kb on + strand, within AMB_RS06830 at 1463.333 kb on + strand, within AMB_RS06830 at 1463.333 kb on + strand, within AMB_RS06830 at 1463.503 kb on + strand at 1463.504 kb on - strand at 1463.504 kb on - strand at 1463.525 kb on + strand at 1463.526 kb on - strand at 1463.526 kb on - strand at 1463.526 kb on - strand at 1463.552 kb on + strand at 1463.727 kb on + strand, within AMB_RS06835 at 1463.727 kb on + strand, within AMB_RS06835 at 1463.727 kb on + strand, within AMB_RS06835 at 1463.728 kb on - strand, within AMB_RS06835 at 1463.728 kb on - strand, within AMB_RS06835 at 1463.728 kb on - strand, within AMB_RS06835 at 1463.728 kb on - strand, within AMB_RS06835 at 1463.728 kb on - strand, within AMB_RS06835 at 1463.728 kb on - strand, within AMB_RS06835 at 1464.107 kb on + strand at 1464.107 kb on + strand at 1464.107 kb on + strand at 1464.107 kb on + strand at 1464.107 kb on + strand at 1464.107 kb on + strand at 1464.108 kb on - strand at 1464.108 kb on - strand at 1464.108 kb on - strand at 1464.108 kb on - strand at 1464.108 kb on - strand at 1464.108 kb on - strand at 1464.109 kb on + strand at 1464.109 kb on + strand at 1464.110 kb on - strand at 1464.110 kb on - strand at 1464.110 kb on - strand at 1464.110 kb on - strand at 1464.110 kb on - strand at 1464.150 kb on + strand at 1464.150 kb on + strand at 1464.151 kb on - strand at 1464.151 kb on - strand at 1464.372 kb on + strand, within AMB_RS06840 at 1464.373 kb on - strand, within AMB_RS06840 at 1464.514 kb on + strand, within AMB_RS06840 at 1464.515 kb on - strand, within AMB_RS06840 at 1464.594 kb on + strand at 1464.594 kb on + strand at 1464.594 kb on + strand at 1464.594 kb on + strand at 1464.595 kb on - strand at 1464.628 kb on + strand at 1464.628 kb on + strand at 1464.629 kb on - strand at 1464.629 kb on - strand at 1464.629 kb on - strand at 1464.629 kb on - strand at 1464.751 kb on + strand at 1464.794 kb on + strand at 1464.795 kb on - strand at 1464.795 kb on - strand at 1465.126 kb on + strand, within AMB_RS06845 at 1465.219 kb on + strand, within AMB_RS06845 at 1465.220 kb on - strand, within AMB_RS06845 at 1465.220 kb on - strand, within AMB_RS06845 at 1465.332 kb on + strand, within AMB_RS06845 at 1465.333 kb on - strand, within AMB_RS06845 at 1465.333 kb on - strand, within AMB_RS06845 at 1465.333 kb on - strand, within AMB_RS06845 at 1465.351 kb on + strand, within AMB_RS06845 at 1465.352 kb on - strand, within AMB_RS06845 at 1465.352 kb on - strand, within AMB_RS06845
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 1,463,294 + AMB_RS06830 0.59 -1.6 1,463,294 + AMB_RS06830 0.59 -0.6 1,463,295 - AMB_RS06830 0.59 -1.2 1,463,295 - AMB_RS06830 0.59 -1.2 1,463,295 - AMB_RS06830 0.59 -0.6 1,463,295 - AMB_RS06830 0.59 -0.8 1,463,333 + AMB_RS06830 0.65 -0.6 1,463,333 + AMB_RS06830 0.65 +0.4 1,463,333 + AMB_RS06830 0.65 +0.0 1,463,503 + -1.9 1,463,504 - +1.0 1,463,504 - -0.5 1,463,525 + +0.4 1,463,526 - -0.6 1,463,526 - +0.4 1,463,526 - -0.6 1,463,552 + -0.6 1,463,727 + AMB_RS06835 0.34 -3.2 1,463,727 + AMB_RS06835 0.34 +0.4 1,463,727 + AMB_RS06835 0.34 -1.2 1,463,728 - AMB_RS06835 0.34 -1.6 1,463,728 - AMB_RS06835 0.34 -0.6 1,463,728 - AMB_RS06835 0.34 -0.2 1,463,728 - AMB_RS06835 0.34 -3.2 1,463,728 - AMB_RS06835 0.34 -1.2 1,463,728 - AMB_RS06835 0.34 +0.4 1,464,107 + +0.4 1,464,107 + -1.6 1,464,107 + +0.1 1,464,107 + -0.2 1,464,107 + +0.4 1,464,107 + -1.6 1,464,108 - -1.2 1,464,108 - +0.4 1,464,108 - -0.6 1,464,108 - -2.7 1,464,108 - -1.2 1,464,108 - -0.3 1,464,109 + -1.9 1,464,109 + -0.9 1,464,110 - -2.8 1,464,110 - +0.4 1,464,110 - -0.6 1,464,110 - -1.6 1,464,110 - +0.4 1,464,150 + +0.4 1,464,150 + +0.1 1,464,151 - -0.2 1,464,151 - +0.4 1,464,372 + AMB_RS06840 0.48 -1.9 1,464,373 - AMB_RS06840 0.48 -1.9 1,464,514 + AMB_RS06840 0.85 -1.2 1,464,515 - AMB_RS06840 0.85 -0.6 1,464,594 + -1.3 1,464,594 + +0.4 1,464,594 + -1.6 1,464,594 + +0.4 1,464,595 - -2.2 1,464,628 + -0.7 1,464,628 + -2.9 1,464,629 - +1.4 1,464,629 - +0.4 1,464,629 - -1.2 1,464,629 - +0.4 1,464,751 + +0.4 1,464,794 + -1.2 1,464,795 - +0.4 1,464,795 - -0.4 1,465,126 + AMB_RS06845 0.41 -1.6 1,465,219 + AMB_RS06845 0.51 -2.2 1,465,220 - AMB_RS06845 0.51 +0.4 1,465,220 - AMB_RS06845 0.51 -0.6 1,465,332 + AMB_RS06845 0.64 -1.6 1,465,333 - AMB_RS06845 0.64 +1.4 1,465,333 - AMB_RS06845 0.64 -3.8 1,465,333 - AMB_RS06845 0.64 +0.4 1,465,351 + AMB_RS06845 0.66 -1.2 1,465,352 - AMB_RS06845 0.66 -0.9 1,465,352 - AMB_RS06845 0.66 -2.7
Or see this region's nucleotide sequence