Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06475

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06465 and AMB_RS06470 are separated by 36 nucleotidesAMB_RS06470 and AMB_RS06475 are separated by 4 nucleotidesAMB_RS06475 and AMB_RS24150 are separated by 444 nucleotides AMB_RS06465: AMB_RS06465 - transcriptional regulator, at 1,373,867 to 1,374,772 _RS06465 AMB_RS06470: AMB_RS06470 - glutathione S-transferase, at 1,374,809 to 1,375,489 _RS06470 AMB_RS06475: AMB_RS06475 - hypothetical protein, at 1,375,494 to 1,376,392 _RS06475 AMB_RS24150: AMB_RS24150 - hypothetical protein, at 1,376,837 to 1,377,757 _RS24150 Position (kb) 1375 1376 1377Strain fitness (log2 ratio) -3 -2 -1 0 1at 1374.544 kb on + strand, within AMB_RS06465at 1374.547 kb on - strand, within AMB_RS06465at 1374.774 kb on + strandat 1374.777 kb on - strandat 1374.896 kb on + strand, within AMB_RS06470at 1374.897 kb on - strand, within AMB_RS06470at 1374.925 kb on + strand, within AMB_RS06470at 1374.926 kb on - strand, within AMB_RS06470at 1374.969 kb on - strand, within AMB_RS06470at 1375.092 kb on - strand, within AMB_RS06470at 1375.106 kb on + strand, within AMB_RS06470at 1375.358 kb on + strand, within AMB_RS06470at 1375.358 kb on + strand, within AMB_RS06470at 1375.358 kb on + strand, within AMB_RS06470at 1375.358 kb on + strand, within AMB_RS06470at 1375.358 kb on + strand, within AMB_RS06470at 1375.359 kb on - strand, within AMB_RS06470at 1375.359 kb on - strand, within AMB_RS06470at 1375.359 kb on - strand, within AMB_RS06470at 1375.359 kb on - strand, within AMB_RS06470at 1375.359 kb on - strand, within AMB_RS06470at 1375.359 kb on - strand, within AMB_RS06470at 1375.364 kb on + strand, within AMB_RS06470at 1375.364 kb on + strand, within AMB_RS06470at 1375.364 kb on + strand, within AMB_RS06470at 1375.364 kb on + strand, within AMB_RS06470at 1375.364 kb on + strand, within AMB_RS06470at 1375.365 kb on - strand, within AMB_RS06470at 1375.365 kb on - strand, within AMB_RS06470at 1375.367 kb on - strand, within AMB_RS06470at 1375.406 kb on + strand, within AMB_RS06470at 1375.406 kb on + strand, within AMB_RS06470at 1375.406 kb on + strand, within AMB_RS06470at 1375.406 kb on + strand, within AMB_RS06470at 1375.406 kb on + strand, within AMB_RS06470at 1375.406 kb on + strand, within AMB_RS06470at 1375.407 kb on - strand, within AMB_RS06470at 1375.558 kb on + strandat 1375.558 kb on + strandat 1375.558 kb on + strandat 1375.558 kb on + strandat 1375.558 kb on + strandat 1375.559 kb on - strandat 1375.559 kb on - strandat 1375.898 kb on + strand, within AMB_RS06475at 1375.899 kb on - strand, within AMB_RS06475at 1375.899 kb on - strand, within AMB_RS06475at 1376.138 kb on + strand, within AMB_RS06475at 1376.410 kb on + strandat 1376.416 kb on + strandat 1376.416 kb on + strandat 1376.417 kb on - strandat 1376.417 kb on - strandat 1376.417 kb on - strandat 1376.417 kb on - strandat 1376.417 kb on - strandat 1376.520 kb on + strandat 1376.533 kb on + strandat 1376.533 kb on + strandat 1376.534 kb on - strandat 1376.534 kb on - strandat 1376.534 kb on - strandat 1376.534 kb on - strandat 1376.556 kb on - strandat 1376.686 kb on + strandat 1376.687 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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1,374,544 + AMB_RS06465 0.75 -0.3
1,374,547 - AMB_RS06465 0.75 +0.4
1,374,774 + -1.6
1,374,777 - -1.9
1,374,896 + AMB_RS06470 0.13 -2.9
1,374,897 - AMB_RS06470 0.13 -1.2
1,374,925 + AMB_RS06470 0.17 -0.6
1,374,926 - AMB_RS06470 0.17 +0.4
1,374,969 - AMB_RS06470 0.23 +0.4
1,375,092 - AMB_RS06470 0.42 -0.3
1,375,106 + AMB_RS06470 0.44 -0.6
1,375,358 + AMB_RS06470 0.81 +0.4
1,375,358 + AMB_RS06470 0.81 -1.2
1,375,358 + AMB_RS06470 0.81 -0.6
1,375,358 + AMB_RS06470 0.81 -1.6
1,375,358 + AMB_RS06470 0.81 -1.2
1,375,359 - AMB_RS06470 0.81 -2.2
1,375,359 - AMB_RS06470 0.81 -1.2
1,375,359 - AMB_RS06470 0.81 -2.2
1,375,359 - AMB_RS06470 0.81 +0.4
1,375,359 - AMB_RS06470 0.81 -0.2
1,375,359 - AMB_RS06470 0.81 -2.4
1,375,364 + AMB_RS06470 0.81 -1.9
1,375,364 + AMB_RS06470 0.81 -2.6
1,375,364 + AMB_RS06470 0.81 +0.6
1,375,364 + AMB_RS06470 0.81 -0.9
1,375,364 + AMB_RS06470 0.81 -2.2
1,375,365 - AMB_RS06470 0.82 -0.6
1,375,365 - AMB_RS06470 0.82 -0.6
1,375,367 - AMB_RS06470 0.82 -1.6
1,375,406 + AMB_RS06470 0.88 +0.4
1,375,406 + AMB_RS06470 0.88 -3.3
1,375,406 + AMB_RS06470 0.88 -1.2
1,375,406 + AMB_RS06470 0.88 +0.4
1,375,406 + AMB_RS06470 0.88 -3.0
1,375,406 + AMB_RS06470 0.88 -0.2
1,375,407 - AMB_RS06470 0.88 -0.6
1,375,558 + -0.6
1,375,558 + -0.7
1,375,558 + -1.0
1,375,558 + -1.2
1,375,558 + -0.4
1,375,559 - -2.6
1,375,559 - -1.0
1,375,898 + AMB_RS06475 0.45 -2.7
1,375,899 - AMB_RS06475 0.45 -0.6
1,375,899 - AMB_RS06475 0.45 -1.2
1,376,138 + AMB_RS06475 0.72 -3.7
1,376,410 + -0.6
1,376,416 + -0.6
1,376,416 + +0.4
1,376,417 - -0.6
1,376,417 - -1.9
1,376,417 - +0.4
1,376,417 - -1.6
1,376,417 - -0.6
1,376,520 + +0.4
1,376,533 + -1.2
1,376,533 + -3.0
1,376,534 - +0.4
1,376,534 - -2.2
1,376,534 - +1.4
1,376,534 - +0.4
1,376,556 - +0.4
1,376,686 + -0.7
1,376,687 - -0.6

Or see this region's nucleotide sequence