Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06085

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06075 and AMB_RS06080 are separated by 140 nucleotidesAMB_RS06080 and AMB_RS06085 are separated by 86 nucleotidesAMB_RS06085 and AMB_RS06090 overlap by 4 nucleotidesAMB_RS06090 and AMB_RS06095 overlap by 4 nucleotides AMB_RS06075: AMB_RS06075 - recombinase family protein, at 1,270,845 to 1,272,338 _RS06075 AMB_RS06080: AMB_RS06080 - hypothetical protein, at 1,272,479 to 1,272,832 _RS06080 AMB_RS06085: AMB_RS06085 - hypothetical protein, at 1,272,919 to 1,273,191 _RS06085 AMB_RS06090: AMB_RS06090 - DUF2924 domain-containing protein, at 1,273,188 to 1,273,637 _RS06090 AMB_RS06095: AMB_RS06095 - recombinase family protein, at 1,273,634 to 1,274,977 _RS06095 Position (kb) 1272 1273 1274Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1271.953 kb on - strand, within AMB_RS06075at 1271.965 kb on + strand, within AMB_RS06075at 1271.966 kb on - strand, within AMB_RS06075at 1271.966 kb on - strand, within AMB_RS06075at 1272.046 kb on + strand, within AMB_RS06075at 1272.086 kb on - strand, within AMB_RS06075at 1272.086 kb on - strand, within AMB_RS06075at 1272.086 kb on - strand, within AMB_RS06075at 1272.086 kb on - strand, within AMB_RS06075at 1272.088 kb on + strand, within AMB_RS06075at 1272.088 kb on + strand, within AMB_RS06075at 1272.088 kb on + strand, within AMB_RS06075at 1272.088 kb on + strand, within AMB_RS06075at 1272.088 kb on + strand, within AMB_RS06075at 1272.089 kb on - strand, within AMB_RS06075at 1272.136 kb on + strand, within AMB_RS06075at 1272.137 kb on - strand, within AMB_RS06075at 1272.183 kb on + strand, within AMB_RS06075at 1272.184 kb on - strand, within AMB_RS06075at 1272.184 kb on - strand, within AMB_RS06075at 1272.245 kb on - strandat 1272.280 kb on + strandat 1272.317 kb on - strandat 1272.317 kb on - strandat 1272.363 kb on - strandat 1272.456 kb on - strandat 1272.458 kb on + strandat 1272.458 kb on + strandat 1272.458 kb on + strandat 1272.459 kb on - strandat 1272.459 kb on - strandat 1272.459 kb on - strandat 1272.533 kb on + strand, within AMB_RS06080at 1272.533 kb on + strand, within AMB_RS06080at 1272.533 kb on + strand, within AMB_RS06080at 1272.534 kb on - strand, within AMB_RS06080at 1272.534 kb on - strand, within AMB_RS06080at 1272.534 kb on - strand, within AMB_RS06080at 1272.818 kb on - strandat 1272.818 kb on - strandat 1272.830 kb on + strandat 1272.830 kb on + strandat 1272.830 kb on + strandat 1272.830 kb on + strandat 1272.831 kb on - strandat 1272.831 kb on - strandat 1272.919 kb on - strandat 1272.938 kb on + strandat 1272.939 kb on - strandat 1273.015 kb on - strand, within AMB_RS06085at 1273.015 kb on - strand, within AMB_RS06085at 1273.015 kb on - strand, within AMB_RS06085at 1273.015 kb on - strand, within AMB_RS06085at 1273.100 kb on + strand, within AMB_RS06085at 1273.100 kb on + strand, within AMB_RS06085at 1273.100 kb on + strand, within AMB_RS06085at 1273.323 kb on + strand, within AMB_RS06090at 1273.324 kb on - strand, within AMB_RS06090at 1273.393 kb on - strand, within AMB_RS06090at 1273.512 kb on + strand, within AMB_RS06090at 1273.513 kb on - strand, within AMB_RS06090at 1273.513 kb on - strand, within AMB_RS06090at 1273.518 kb on + strand, within AMB_RS06090at 1273.519 kb on - strand, within AMB_RS06090at 1273.519 kb on - strand, within AMB_RS06090at 1273.519 kb on - strand, within AMB_RS06090at 1273.679 kb on + strandat 1273.679 kb on + strandat 1273.679 kb on + strandat 1273.679 kb on + strandat 1273.679 kb on + strandat 1273.680 kb on - strandat 1273.680 kb on - strandat 1273.680 kb on - strandat 1273.681 kb on + strandat 1273.757 kb on + strandat 1273.757 kb on + strandat 1273.757 kb on + strandat 1273.757 kb on + strandat 1273.758 kb on - strandat 1273.758 kb on - strandat 1273.758 kb on - strandat 1273.758 kb on - strandat 1273.758 kb on - strandat 1273.805 kb on + strand, within AMB_RS06095at 1273.806 kb on - strand, within AMB_RS06095at 1273.806 kb on - strand, within AMB_RS06095at 1273.806 kb on - strand, within AMB_RS06095at 1273.806 kb on - strand, within AMB_RS06095at 1273.984 kb on - strand, within AMB_RS06095at 1274.156 kb on + strand, within AMB_RS06095

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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1,271,953 - AMB_RS06075 0.74 +0.1
1,271,965 + AMB_RS06075 0.75 -0.4
1,271,966 - AMB_RS06075 0.75 +0.4
1,271,966 - AMB_RS06075 0.75 -0.6
1,272,046 + AMB_RS06075 0.80 -1.2
1,272,086 - AMB_RS06075 0.83 -2.9
1,272,086 - AMB_RS06075 0.83 -1.6
1,272,086 - AMB_RS06075 0.83 +1.0
1,272,086 - AMB_RS06075 0.83 +0.4
1,272,088 + AMB_RS06075 0.83 -0.6
1,272,088 + AMB_RS06075 0.83 +0.4
1,272,088 + AMB_RS06075 0.83 -0.6
1,272,088 + AMB_RS06075 0.83 -0.4
1,272,088 + AMB_RS06075 0.83 -1.2
1,272,089 - AMB_RS06075 0.83 +0.4
1,272,136 + AMB_RS06075 0.86 -1.6
1,272,137 - AMB_RS06075 0.86 +0.4
1,272,183 + AMB_RS06075 0.90 -2.2
1,272,184 - AMB_RS06075 0.90 -2.4
1,272,184 - AMB_RS06075 0.90 +0.4
1,272,245 - -0.6
1,272,280 + -0.6
1,272,317 - +0.4
1,272,317 - -2.6
1,272,363 - -1.2
1,272,456 - -0.6
1,272,458 + +0.2
1,272,458 + -2.4
1,272,458 + +1.4
1,272,459 - -0.6
1,272,459 - +0.4
1,272,459 - +0.4
1,272,533 + AMB_RS06080 0.15 -1.2
1,272,533 + AMB_RS06080 0.15 -0.3
1,272,533 + AMB_RS06080 0.15 -0.6
1,272,534 - AMB_RS06080 0.16 -0.6
1,272,534 - AMB_RS06080 0.16 -1.4
1,272,534 - AMB_RS06080 0.16 -1.9
1,272,818 - -1.2
1,272,818 - +0.4
1,272,830 + -1.6
1,272,830 + +0.4
1,272,830 + +2.0
1,272,830 + -0.6
1,272,831 - -1.2
1,272,831 - -1.2
1,272,919 - +0.4
1,272,938 + -0.6
1,272,939 - -0.3
1,273,015 - AMB_RS06085 0.35 -2.4
1,273,015 - AMB_RS06085 0.35 -1.2
1,273,015 - AMB_RS06085 0.35 +0.4
1,273,015 - AMB_RS06085 0.35 -1.0
1,273,100 + AMB_RS06085 0.66 +0.4
1,273,100 + AMB_RS06085 0.66 -1.2
1,273,100 + AMB_RS06085 0.66 -0.6
1,273,323 + AMB_RS06090 0.30 -1.2
1,273,324 - AMB_RS06090 0.30 +0.4
1,273,393 - AMB_RS06090 0.46 -2.9
1,273,512 + AMB_RS06090 0.72 +0.4
1,273,513 - AMB_RS06090 0.72 +0.4
1,273,513 - AMB_RS06090 0.72 -2.3
1,273,518 + AMB_RS06090 0.73 -4.4
1,273,519 - AMB_RS06090 0.74 -0.6
1,273,519 - AMB_RS06090 0.74 -2.7
1,273,519 - AMB_RS06090 0.74 -1.2
1,273,679 + -1.2
1,273,679 + -1.6
1,273,679 + -1.2
1,273,679 + -0.6
1,273,679 + -0.6
1,273,680 - -1.6
1,273,680 - -0.5
1,273,680 - -0.6
1,273,681 + -1.6
1,273,757 + -0.6
1,273,757 + -1.6
1,273,757 + -1.9
1,273,757 + -0.6
1,273,758 - +0.4
1,273,758 - +0.4
1,273,758 - -1.2
1,273,758 - -1.6
1,273,758 - -0.6
1,273,805 + AMB_RS06095 0.13 -4.0
1,273,806 - AMB_RS06095 0.13 -1.2
1,273,806 - AMB_RS06095 0.13 -0.6
1,273,806 - AMB_RS06095 0.13 +0.4
1,273,806 - AMB_RS06095 0.13 -0.6
1,273,984 - AMB_RS06095 0.26 +0.4
1,274,156 + AMB_RS06095 0.39 -1.6

Or see this region's nucleotide sequence