Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05965

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05960 and AMB_RS05965 are separated by 2 nucleotidesAMB_RS05965 and AMB_RS05970 overlap by 4 nucleotidesAMB_RS05970 and AMB_RS05975 overlap by 1 nucleotides AMB_RS05960: AMB_RS05960 - minor capsid protein E, at 1,251,517 to 1,252,539 _RS05960 AMB_RS05965: AMB_RS05965 - hypothetical protein, at 1,252,542 to 1,252,838 _RS05965 AMB_RS05970: AMB_RS05970 - hypothetical protein, at 1,252,835 to 1,253,473 _RS05970 AMB_RS05975: AMB_RS05975 - hypothetical protein, at 1,253,473 to 1,253,901 _RS05975 Position (kb) 1252 1253Strain fitness (log2 ratio) -3 -2 -1 0 1at 1251.601 kb on + strandat 1251.601 kb on + strandat 1251.601 kb on + strandat 1251.602 kb on - strandat 1251.602 kb on - strandat 1251.919 kb on - strand, within AMB_RS05960at 1251.973 kb on + strand, within AMB_RS05960at 1251.974 kb on - strand, within AMB_RS05960at 1251.979 kb on + strand, within AMB_RS05960at 1251.979 kb on + strand, within AMB_RS05960at 1251.979 kb on + strand, within AMB_RS05960at 1251.980 kb on - strand, within AMB_RS05960at 1252.180 kb on + strand, within AMB_RS05960at 1252.180 kb on + strand, within AMB_RS05960at 1252.180 kb on + strand, within AMB_RS05960at 1252.181 kb on - strand, within AMB_RS05960at 1252.186 kb on + strand, within AMB_RS05960at 1252.186 kb on + strand, within AMB_RS05960at 1252.189 kb on + strand, within AMB_RS05960at 1252.267 kb on + strand, within AMB_RS05960at 1252.267 kb on + strand, within AMB_RS05960at 1252.268 kb on - strand, within AMB_RS05960at 1252.268 kb on - strand, within AMB_RS05960at 1252.369 kb on + strand, within AMB_RS05960at 1252.369 kb on + strand, within AMB_RS05960at 1252.369 kb on + strand, within AMB_RS05960at 1252.369 kb on + strand, within AMB_RS05960at 1252.370 kb on - strand, within AMB_RS05960at 1252.370 kb on - strand, within AMB_RS05960at 1252.423 kb on + strand, within AMB_RS05960at 1252.423 kb on + strand, within AMB_RS05960at 1252.423 kb on + strand, within AMB_RS05960at 1252.423 kb on + strand, within AMB_RS05960at 1252.423 kb on + strand, within AMB_RS05960at 1252.423 kb on + strand, within AMB_RS05960at 1252.423 kb on + strand, within AMB_RS05960at 1252.423 kb on + strand, within AMB_RS05960at 1252.423 kb on + strand, within AMB_RS05960at 1252.423 kb on + strand, within AMB_RS05960at 1252.424 kb on - strand, within AMB_RS05960at 1252.424 kb on - strand, within AMB_RS05960at 1252.424 kb on - strand, within AMB_RS05960at 1252.424 kb on - strand, within AMB_RS05960at 1252.424 kb on - strand, within AMB_RS05960at 1252.424 kb on - strand, within AMB_RS05960at 1252.424 kb on - strand, within AMB_RS05960at 1252.424 kb on - strand, within AMB_RS05960at 1252.424 kb on - strand, within AMB_RS05960at 1252.424 kb on - strand, within AMB_RS05960at 1252.424 kb on - strand, within AMB_RS05960at 1252.608 kb on + strand, within AMB_RS05965at 1252.609 kb on - strand, within AMB_RS05965at 1252.609 kb on - strand, within AMB_RS05965at 1252.609 kb on - strand, within AMB_RS05965at 1253.002 kb on + strand, within AMB_RS05970at 1253.002 kb on + strand, within AMB_RS05970at 1253.003 kb on - strand, within AMB_RS05970at 1253.003 kb on - strand, within AMB_RS05970at 1253.021 kb on + strand, within AMB_RS05970at 1253.021 kb on + strand, within AMB_RS05970at 1253.235 kb on - strand, within AMB_RS05970at 1253.647 kb on + strand, within AMB_RS05975at 1253.647 kb on + strand, within AMB_RS05975at 1253.647 kb on + strand, within AMB_RS05975at 1253.647 kb on + strand, within AMB_RS05975at 1253.647 kb on + strand, within AMB_RS05975at 1253.648 kb on - strand, within AMB_RS05975at 1253.648 kb on - strand, within AMB_RS05975at 1253.648 kb on - strand, within AMB_RS05975at 1253.707 kb on - strand, within AMB_RS05975at 1253.722 kb on - strand, within AMB_RS05975at 1253.722 kb on - strand, within AMB_RS05975at 1253.722 kb on - strand, within AMB_RS05975

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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1,251,601 + -0.6
1,251,601 + -1.3
1,251,601 + -2.6
1,251,602 - +0.2
1,251,602 - -0.6
1,251,919 - AMB_RS05960 0.39 -1.2
1,251,973 + AMB_RS05960 0.45 -0.6
1,251,974 - AMB_RS05960 0.45 -0.4
1,251,979 + AMB_RS05960 0.45 -0.6
1,251,979 + AMB_RS05960 0.45 -0.6
1,251,979 + AMB_RS05960 0.45 +0.4
1,251,980 - AMB_RS05960 0.45 +0.4
1,252,180 + AMB_RS05960 0.65 -1.1
1,252,180 + AMB_RS05960 0.65 -1.2
1,252,180 + AMB_RS05960 0.65 -0.2
1,252,181 - AMB_RS05960 0.65 +0.4
1,252,186 + AMB_RS05960 0.65 -1.2
1,252,186 + AMB_RS05960 0.65 +0.4
1,252,189 + AMB_RS05960 0.66 +0.4
1,252,267 + AMB_RS05960 0.73 +0.4
1,252,267 + AMB_RS05960 0.73 -0.6
1,252,268 - AMB_RS05960 0.73 -0.6
1,252,268 - AMB_RS05960 0.73 -2.7
1,252,369 + AMB_RS05960 0.83 -2.5
1,252,369 + AMB_RS05960 0.83 +0.4
1,252,369 + AMB_RS05960 0.83 -2.6
1,252,369 + AMB_RS05960 0.83 +0.4
1,252,370 - AMB_RS05960 0.83 -0.4
1,252,370 - AMB_RS05960 0.83 -0.6
1,252,423 + AMB_RS05960 0.89 -1.9
1,252,423 + AMB_RS05960 0.89 -0.6
1,252,423 + AMB_RS05960 0.89 -1.6
1,252,423 + AMB_RS05960 0.89 -1.9
1,252,423 + AMB_RS05960 0.89 -1.2
1,252,423 + AMB_RS05960 0.89 -1.7
1,252,423 + AMB_RS05960 0.89 -0.6
1,252,423 + AMB_RS05960 0.89 -0.6
1,252,423 + AMB_RS05960 0.89 -0.6
1,252,423 + AMB_RS05960 0.89 -0.6
1,252,424 - AMB_RS05960 0.89 -1.6
1,252,424 - AMB_RS05960 0.89 +0.4
1,252,424 - AMB_RS05960 0.89 +0.4
1,252,424 - AMB_RS05960 0.89 -2.2
1,252,424 - AMB_RS05960 0.89 -0.6
1,252,424 - AMB_RS05960 0.89 +0.4
1,252,424 - AMB_RS05960 0.89 -1.0
1,252,424 - AMB_RS05960 0.89 -2.2
1,252,424 - AMB_RS05960 0.89 +0.4
1,252,424 - AMB_RS05960 0.89 -0.4
1,252,424 - AMB_RS05960 0.89 -1.2
1,252,608 + AMB_RS05965 0.22 -2.9
1,252,609 - AMB_RS05965 0.23 -0.6
1,252,609 - AMB_RS05965 0.23 -1.9
1,252,609 - AMB_RS05965 0.23 -1.2
1,253,002 + AMB_RS05970 0.26 +0.4
1,253,002 + AMB_RS05970 0.26 -0.4
1,253,003 - AMB_RS05970 0.26 -0.6
1,253,003 - AMB_RS05970 0.26 -2.6
1,253,021 + AMB_RS05970 0.29 -2.2
1,253,021 + AMB_RS05970 0.29 +0.4
1,253,235 - AMB_RS05970 0.63 +0.4
1,253,647 + AMB_RS05975 0.41 +0.4
1,253,647 + AMB_RS05975 0.41 +0.4
1,253,647 + AMB_RS05975 0.41 -1.9
1,253,647 + AMB_RS05975 0.41 -2.6
1,253,647 + AMB_RS05975 0.41 +0.4
1,253,648 - AMB_RS05975 0.41 -1.6
1,253,648 - AMB_RS05975 0.41 +0.4
1,253,648 - AMB_RS05975 0.41 +1.4
1,253,707 - AMB_RS05975 0.55 +0.4
1,253,722 - AMB_RS05975 0.58 +0.4
1,253,722 - AMB_RS05975 0.58 +0.4
1,253,722 - AMB_RS05975 0.58 +0.4

Or see this region's nucleotide sequence