Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05625

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05620 and AMB_RS05625 are separated by 127 nucleotidesAMB_RS05625 and AMB_RS05630 are separated by 201 nucleotides AMB_RS05620: AMB_RS05620 - GGDEF domain-containing protein, at 1,172,769 to 1,174,514 _RS05620 AMB_RS05625: AMB_RS05625 - phosphate ABC transporter ATP-binding protein, at 1,174,642 to 1,175,424 _RS05625 AMB_RS05630: AMB_RS05630 - amino acid decarboxylase, at 1,175,626 to 1,177,977 _RS05630 Position (kb) 1174 1175 1176Strain fitness (log2 ratio) -3 -2 -1 0 1at 1173.790 kb on + strand, within AMB_RS05620at 1173.790 kb on + strand, within AMB_RS05620at 1173.790 kb on + strand, within AMB_RS05620at 1173.791 kb on - strand, within AMB_RS05620at 1173.791 kb on - strand, within AMB_RS05620at 1173.930 kb on - strand, within AMB_RS05620at 1174.503 kb on - strandat 1174.664 kb on + strandat 1174.664 kb on + strandat 1174.664 kb on + strandat 1174.664 kb on + strandat 1174.664 kb on + strandat 1174.664 kb on + strandat 1174.665 kb on - strandat 1174.665 kb on - strandat 1174.665 kb on - strandat 1174.665 kb on - strandat 1174.665 kb on - strandat 1174.665 kb on - strandat 1174.665 kb on - strandat 1174.808 kb on + strand, within AMB_RS05625at 1174.808 kb on + strand, within AMB_RS05625at 1174.809 kb on - strand, within AMB_RS05625at 1174.809 kb on - strand, within AMB_RS05625at 1174.809 kb on - strand, within AMB_RS05625at 1174.893 kb on + strand, within AMB_RS05625at 1175.096 kb on + strand, within AMB_RS05625at 1175.096 kb on + strand, within AMB_RS05625at 1175.097 kb on - strand, within AMB_RS05625at 1175.097 kb on - strand, within AMB_RS05625at 1175.750 kb on + strandat 1175.750 kb on + strandat 1175.751 kb on - strandat 1175.820 kb on - strandat 1175.820 kb on - strandat 1175.873 kb on + strand, within AMB_RS05630at 1175.874 kb on - strand, within AMB_RS05630at 1175.874 kb on - strand, within AMB_RS05630at 1175.874 kb on - strand, within AMB_RS05630at 1176.024 kb on + strand, within AMB_RS05630at 1176.189 kb on + strand, within AMB_RS05630at 1176.189 kb on + strand, within AMB_RS05630at 1176.189 kb on + strand, within AMB_RS05630at 1176.189 kb on + strand, within AMB_RS05630at 1176.190 kb on - strand, within AMB_RS05630at 1176.190 kb on - strand, within AMB_RS05630at 1176.190 kb on - strand, within AMB_RS05630at 1176.190 kb on - strand, within AMB_RS05630at 1176.230 kb on + strand, within AMB_RS05630at 1176.231 kb on - strand, within AMB_RS05630at 1176.336 kb on - strand, within AMB_RS05630

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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1,173,790 + AMB_RS05620 0.58 -1.2
1,173,790 + AMB_RS05620 0.58 +0.4
1,173,790 + AMB_RS05620 0.58 -1.2
1,173,791 - AMB_RS05620 0.59 -1.7
1,173,791 - AMB_RS05620 0.59 -1.2
1,173,930 - AMB_RS05620 0.66 -1.9
1,174,503 - -0.2
1,174,664 + -1.9
1,174,664 + +0.4
1,174,664 + -3.0
1,174,664 + -1.9
1,174,664 + -1.2
1,174,664 + -0.6
1,174,665 - +0.4
1,174,665 - +0.4
1,174,665 - -0.2
1,174,665 - +0.4
1,174,665 - -0.6
1,174,665 - +0.4
1,174,665 - -1.2
1,174,808 + AMB_RS05625 0.21 -2.6
1,174,808 + AMB_RS05625 0.21 -0.6
1,174,809 - AMB_RS05625 0.21 -1.2
1,174,809 - AMB_RS05625 0.21 -1.2
1,174,809 - AMB_RS05625 0.21 -0.1
1,174,893 + AMB_RS05625 0.32 +0.4
1,175,096 + AMB_RS05625 0.58 -1.6
1,175,096 + AMB_RS05625 0.58 -1.6
1,175,097 - AMB_RS05625 0.58 +0.4
1,175,097 - AMB_RS05625 0.58 -0.6
1,175,750 + +0.4
1,175,750 + -0.6
1,175,751 - -3.2
1,175,820 - -0.6
1,175,820 - -1.2
1,175,873 + AMB_RS05630 0.11 -2.6
1,175,874 - AMB_RS05630 0.11 +0.4
1,175,874 - AMB_RS05630 0.11 -1.6
1,175,874 - AMB_RS05630 0.11 -1.9
1,176,024 + AMB_RS05630 0.17 -0.6
1,176,189 + AMB_RS05630 0.24 -0.6
1,176,189 + AMB_RS05630 0.24 -0.6
1,176,189 + AMB_RS05630 0.24 +0.4
1,176,189 + AMB_RS05630 0.24 -3.7
1,176,190 - AMB_RS05630 0.24 -3.5
1,176,190 - AMB_RS05630 0.24 +0.4
1,176,190 - AMB_RS05630 0.24 -1.9
1,176,190 - AMB_RS05630 0.24 +0.4
1,176,230 + AMB_RS05630 0.26 +0.4
1,176,231 - AMB_RS05630 0.26 -3.0
1,176,336 - AMB_RS05630 0.30 -0.6

Or see this region's nucleotide sequence