Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05560

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05555 and AMB_RS05560 are separated by 92 nucleotidesAMB_RS05560 and AMB_RS05565 are separated by 13 nucleotides AMB_RS05555: AMB_RS05555 - ABC transporter ATP-binding protein, at 1,158,560 to 1,160,179 _RS05555 AMB_RS05560: AMB_RS05560 - hypothetical protein, at 1,160,272 to 1,160,457 _RS05560 AMB_RS05565: AMB_RS05565 - DUF839 domain-containing protein, at 1,160,471 to 1,162,333 _RS05565 Position (kb) 1160 1161Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1159.283 kb on + strand, within AMB_RS05555at 1159.283 kb on + strand, within AMB_RS05555at 1159.284 kb on - strand, within AMB_RS05555at 1159.284 kb on - strand, within AMB_RS05555at 1159.284 kb on - strand, within AMB_RS05555at 1159.292 kb on + strand, within AMB_RS05555at 1159.292 kb on + strand, within AMB_RS05555at 1159.292 kb on + strand, within AMB_RS05555at 1159.293 kb on - strand, within AMB_RS05555at 1159.293 kb on - strand, within AMB_RS05555at 1159.293 kb on - strand, within AMB_RS05555at 1159.293 kb on - strand, within AMB_RS05555at 1159.557 kb on - strand, within AMB_RS05555at 1159.574 kb on + strand, within AMB_RS05555at 1159.574 kb on + strand, within AMB_RS05555at 1159.574 kb on + strand, within AMB_RS05555at 1159.574 kb on + strand, within AMB_RS05555at 1159.574 kb on + strand, within AMB_RS05555at 1159.574 kb on + strand, within AMB_RS05555at 1159.575 kb on - strand, within AMB_RS05555at 1159.727 kb on + strand, within AMB_RS05555at 1160.018 kb on + strandat 1160.019 kb on - strandat 1160.135 kb on + strandat 1160.135 kb on + strandat 1160.135 kb on + strandat 1160.135 kb on + strandat 1160.136 kb on - strandat 1160.136 kb on - strandat 1160.194 kb on - strandat 1160.197 kb on + strandat 1160.197 kb on + strandat 1160.198 kb on - strandat 1160.293 kb on - strand, within AMB_RS05560at 1160.326 kb on + strand, within AMB_RS05560at 1160.327 kb on - strand, within AMB_RS05560at 1160.359 kb on + strand, within AMB_RS05560at 1160.366 kb on + strand, within AMB_RS05560at 1160.456 kb on - strandat 1160.633 kb on + strandat 1160.634 kb on - strandat 1160.634 kb on - strandat 1160.669 kb on + strand, within AMB_RS05565at 1160.669 kb on + strand, within AMB_RS05565at 1160.669 kb on + strand, within AMB_RS05565at 1160.670 kb on - strand, within AMB_RS05565at 1160.670 kb on - strand, within AMB_RS05565at 1160.859 kb on - strand, within AMB_RS05565at 1160.909 kb on + strand, within AMB_RS05565at 1160.909 kb on + strand, within AMB_RS05565at 1160.909 kb on + strand, within AMB_RS05565at 1160.909 kb on + strand, within AMB_RS05565at 1160.909 kb on + strand, within AMB_RS05565at 1160.909 kb on + strand, within AMB_RS05565at 1160.909 kb on + strand, within AMB_RS05565at 1160.909 kb on + strand, within AMB_RS05565at 1160.909 kb on + strand, within AMB_RS05565at 1160.909 kb on + strand, within AMB_RS05565at 1160.909 kb on + strand, within AMB_RS05565at 1160.909 kb on + strand, within AMB_RS05565at 1160.909 kb on + strand, within AMB_RS05565at 1160.909 kb on + strand, within AMB_RS05565at 1160.910 kb on - strand, within AMB_RS05565at 1160.910 kb on - strand, within AMB_RS05565at 1160.910 kb on - strand, within AMB_RS05565at 1160.910 kb on - strand, within AMB_RS05565at 1160.910 kb on - strand, within AMB_RS05565at 1160.910 kb on - strand, within AMB_RS05565at 1160.910 kb on - strand, within AMB_RS05565at 1160.910 kb on - strand, within AMB_RS05565at 1160.910 kb on - strand, within AMB_RS05565at 1160.910 kb on - strand, within AMB_RS05565at 1160.910 kb on - strand, within AMB_RS05565at 1160.910 kb on - strand, within AMB_RS05565at 1160.910 kb on - strand, within AMB_RS05565at 1161.080 kb on + strand, within AMB_RS05565at 1161.080 kb on + strand, within AMB_RS05565at 1161.081 kb on - strand, within AMB_RS05565at 1161.081 kb on - strand, within AMB_RS05565at 1161.246 kb on - strand, within AMB_RS05565at 1161.386 kb on + strand, within AMB_RS05565at 1161.386 kb on + strand, within AMB_RS05565at 1161.387 kb on - strand, within AMB_RS05565at 1161.387 kb on - strand, within AMB_RS05565

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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1,159,283 + AMB_RS05555 0.45 +0.4
1,159,283 + AMB_RS05555 0.45 +0.4
1,159,284 - AMB_RS05555 0.45 -0.3
1,159,284 - AMB_RS05555 0.45 +0.4
1,159,284 - AMB_RS05555 0.45 -0.2
1,159,292 + AMB_RS05555 0.45 -0.6
1,159,292 + AMB_RS05555 0.45 -0.6
1,159,292 + AMB_RS05555 0.45 -2.2
1,159,293 - AMB_RS05555 0.45 -0.6
1,159,293 - AMB_RS05555 0.45 -0.6
1,159,293 - AMB_RS05555 0.45 -2.2
1,159,293 - AMB_RS05555 0.45 +0.4
1,159,557 - AMB_RS05555 0.62 -0.3
1,159,574 + AMB_RS05555 0.63 -1.6
1,159,574 + AMB_RS05555 0.63 +0.4
1,159,574 + AMB_RS05555 0.63 -0.2
1,159,574 + AMB_RS05555 0.63 -0.6
1,159,574 + AMB_RS05555 0.63 -0.6
1,159,574 + AMB_RS05555 0.63 +0.4
1,159,575 - AMB_RS05555 0.63 -1.9
1,159,727 + AMB_RS05555 0.72 -1.2
1,160,018 + -0.1
1,160,019 - -2.2
1,160,135 + -1.2
1,160,135 + -0.1
1,160,135 + +0.4
1,160,135 + -1.2
1,160,136 - +0.4
1,160,136 - -1.6
1,160,194 - -1.9
1,160,197 + -2.7
1,160,197 + -0.6
1,160,198 - +0.4
1,160,293 - AMB_RS05560 0.11 -2.2
1,160,326 + AMB_RS05560 0.29 -1.6
1,160,327 - AMB_RS05560 0.30 -0.6
1,160,359 + AMB_RS05560 0.47 -2.0
1,160,366 + AMB_RS05560 0.51 +0.4
1,160,456 - -0.3
1,160,633 + -0.2
1,160,634 - -2.4
1,160,634 - -1.6
1,160,669 + AMB_RS05565 0.11 -1.2
1,160,669 + AMB_RS05565 0.11 -1.9
1,160,669 + AMB_RS05565 0.11 -1.9
1,160,670 - AMB_RS05565 0.11 +0.4
1,160,670 - AMB_RS05565 0.11 -0.9
1,160,859 - AMB_RS05565 0.21 -1.2
1,160,909 + AMB_RS05565 0.24 -1.4
1,160,909 + AMB_RS05565 0.24 -1.2
1,160,909 + AMB_RS05565 0.24 -0.6
1,160,909 + AMB_RS05565 0.24 -0.2
1,160,909 + AMB_RS05565 0.24 -1.2
1,160,909 + AMB_RS05565 0.24 +0.4
1,160,909 + AMB_RS05565 0.24 -1.6
1,160,909 + AMB_RS05565 0.24 -0.6
1,160,909 + AMB_RS05565 0.24 +0.4
1,160,909 + AMB_RS05565 0.24 -1.6
1,160,909 + AMB_RS05565 0.24 -0.1
1,160,909 + AMB_RS05565 0.24 -0.0
1,160,909 + AMB_RS05565 0.24 -3.8
1,160,909 + AMB_RS05565 0.24 -0.6
1,160,910 - AMB_RS05565 0.24 +1.3
1,160,910 - AMB_RS05565 0.24 +0.4
1,160,910 - AMB_RS05565 0.24 -1.2
1,160,910 - AMB_RS05565 0.24 +0.4
1,160,910 - AMB_RS05565 0.24 -1.6
1,160,910 - AMB_RS05565 0.24 -0.6
1,160,910 - AMB_RS05565 0.24 +0.4
1,160,910 - AMB_RS05565 0.24 -0.6
1,160,910 - AMB_RS05565 0.24 -0.3
1,160,910 - AMB_RS05565 0.24 -1.2
1,160,910 - AMB_RS05565 0.24 +1.4
1,160,910 - AMB_RS05565 0.24 +0.4
1,160,910 - AMB_RS05565 0.24 +0.4
1,161,080 + AMB_RS05565 0.33 -0.6
1,161,080 + AMB_RS05565 0.33 -1.6
1,161,081 - AMB_RS05565 0.33 -0.6
1,161,081 - AMB_RS05565 0.33 -1.2
1,161,246 - AMB_RS05565 0.42 -1.4
1,161,386 + AMB_RS05565 0.49 -0.6
1,161,386 + AMB_RS05565 0.49 +0.4
1,161,387 - AMB_RS05565 0.49 +0.0
1,161,387 - AMB_RS05565 0.49 -1.3

Or see this region's nucleotide sequence