Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23985 and AMB_RS05335 are separated by 1 nucleotides AMB_RS05335 and AMB_RS05340 overlap by 38 nucleotides AMB_RS05340 and AMB_RS05345 are separated by 8 nucleotides AMB_RS05345 and AMB_RS05350 are separated by 112 nucleotides AMB_RS05350 and AMB_RS05355 overlap by 4 nucleotides
AMB_RS23985: AMB_RS23985 - signal transduction histidine kinase, at 1,105,968 to 1,108,292
_RS23985
AMB_RS05335: AMB_RS05335 - response regulator, at 1,108,294 to 1,109,328
_RS05335
AMB_RS05340: AMB_RS05340 - IS3 family transposase, at 1,109,291 to 1,110,136
_RS05340
AMB_RS05345: AMB_RS05345 - transposase, at 1,110,145 to 1,110,438
_RS05345
AMB_RS05350: AMB_RS05350 - hypothetical protein, at 1,110,551 to 1,110,796
_RS05350
AMB_RS05355: AMB_RS05355 - response regulator receiver modulated metal-depenent phosphohydrolase, at 1,110,793 to 1,111,959
_RS05355
Position (kb) 1109
1110
1111 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1108.369 kb on + strand at 1108.369 kb on + strand at 1108.370 kb on - strand at 1108.370 kb on - strand at 1108.370 kb on - strand at 1108.484 kb on + strand, within AMB_RS05335 at 1108.544 kb on + strand, within AMB_RS05335 at 1108.545 kb on - strand, within AMB_RS05335 at 1108.603 kb on + strand, within AMB_RS05335 at 1108.603 kb on + strand, within AMB_RS05335 at 1108.603 kb on + strand, within AMB_RS05335 at 1108.604 kb on - strand, within AMB_RS05335 at 1108.604 kb on - strand, within AMB_RS05335 at 1108.604 kb on - strand, within AMB_RS05335 at 1108.604 kb on - strand, within AMB_RS05335 at 1108.604 kb on - strand, within AMB_RS05335 at 1108.604 kb on - strand, within AMB_RS05335 at 1108.606 kb on + strand, within AMB_RS05335 at 1108.606 kb on + strand, within AMB_RS05335 at 1108.606 kb on + strand, within AMB_RS05335 at 1108.606 kb on + strand, within AMB_RS05335 at 1108.606 kb on + strand, within AMB_RS05335 at 1108.607 kb on - strand, within AMB_RS05335 at 1108.607 kb on - strand, within AMB_RS05335 at 1108.607 kb on - strand, within AMB_RS05335 at 1108.607 kb on - strand, within AMB_RS05335 at 1108.607 kb on - strand, within AMB_RS05335 at 1108.607 kb on - strand, within AMB_RS05335 at 1108.607 kb on - strand, within AMB_RS05335 at 1108.607 kb on - strand, within AMB_RS05335 at 1108.607 kb on - strand, within AMB_RS05335 at 1108.607 kb on - strand, within AMB_RS05335 at 1108.680 kb on + strand, within AMB_RS05335 at 1108.864 kb on + strand, within AMB_RS05335 at 1108.864 kb on + strand, within AMB_RS05335 at 1108.864 kb on + strand, within AMB_RS05335 at 1108.864 kb on + strand, within AMB_RS05335 at 1108.864 kb on + strand, within AMB_RS05335 at 1108.865 kb on - strand, within AMB_RS05335 at 1108.865 kb on - strand, within AMB_RS05335 at 1108.951 kb on - strand, within AMB_RS05335 at 1109.258 kb on - strand at 1109.258 kb on - strand at 1109.293 kb on - strand at 1110.512 kb on + strand at 1110.512 kb on + strand at 1110.512 kb on + strand at 1110.512 kb on + strand at 1110.512 kb on + strand at 1110.512 kb on + strand at 1110.570 kb on - strand at 1110.570 kb on - strand at 1110.596 kb on + strand, within AMB_RS05350 at 1110.615 kb on + strand, within AMB_RS05350 at 1110.616 kb on - strand, within AMB_RS05350 at 1111.113 kb on + strand, within AMB_RS05355 at 1111.114 kb on - strand, within AMB_RS05355
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 1,108,369 + -0.6 1,108,369 + -2.4 1,108,370 - -0.6 1,108,370 - +0.4 1,108,370 - -1.6 1,108,484 + AMB_RS05335 0.18 -2.0 1,108,544 + AMB_RS05335 0.24 -1.6 1,108,545 - AMB_RS05335 0.24 +0.4 1,108,603 + AMB_RS05335 0.30 -3.3 1,108,603 + AMB_RS05335 0.30 -3.6 1,108,603 + AMB_RS05335 0.30 +0.4 1,108,604 - AMB_RS05335 0.30 -1.9 1,108,604 - AMB_RS05335 0.30 +0.4 1,108,604 - AMB_RS05335 0.30 -2.9 1,108,604 - AMB_RS05335 0.30 -0.3 1,108,604 - AMB_RS05335 0.30 -1.1 1,108,604 - AMB_RS05335 0.30 -1.1 1,108,606 + AMB_RS05335 0.30 +0.4 1,108,606 + AMB_RS05335 0.30 +0.3 1,108,606 + AMB_RS05335 0.30 -1.1 1,108,606 + AMB_RS05335 0.30 -0.6 1,108,606 + AMB_RS05335 0.30 -1.1 1,108,607 - AMB_RS05335 0.30 +0.2 1,108,607 - AMB_RS05335 0.30 -0.6 1,108,607 - AMB_RS05335 0.30 -0.9 1,108,607 - AMB_RS05335 0.30 -0.5 1,108,607 - AMB_RS05335 0.30 -0.6 1,108,607 - AMB_RS05335 0.30 -2.1 1,108,607 - AMB_RS05335 0.30 -0.0 1,108,607 - AMB_RS05335 0.30 +0.4 1,108,607 - AMB_RS05335 0.30 -0.6 1,108,607 - AMB_RS05335 0.30 -1.9 1,108,680 + AMB_RS05335 0.37 -2.6 1,108,864 + AMB_RS05335 0.55 -2.4 1,108,864 + AMB_RS05335 0.55 -0.6 1,108,864 + AMB_RS05335 0.55 -2.4 1,108,864 + AMB_RS05335 0.55 -0.6 1,108,864 + AMB_RS05335 0.55 -1.9 1,108,865 - AMB_RS05335 0.55 +0.4 1,108,865 - AMB_RS05335 0.55 -1.1 1,108,951 - AMB_RS05335 0.63 +0.4 1,109,258 - +0.4 1,109,258 - -1.9 1,109,293 - -0.6 1,110,512 + +0.4 1,110,512 + -1.1 1,110,512 + +0.4 1,110,512 + -1.6 1,110,512 + -0.8 1,110,512 + -0.6 1,110,570 - -1.1 1,110,570 - -2.7 1,110,596 + AMB_RS05350 0.18 -1.1 1,110,615 + AMB_RS05350 0.26 -2.1 1,110,616 - AMB_RS05350 0.26 -0.6 1,111,113 + AMB_RS05355 0.27 -0.6 1,111,114 - AMB_RS05355 0.28 -0.1
Or see this region's nucleotide sequence