Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04930

Experiment: an_mag_3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	an_mag_3
1,022,372	+		AMB_RS04920	0.58	-1.2
1,022,372	+		AMB_RS04920	0.58	+0.5
1,022,372	+		AMB_RS04920	0.58	+0.5
1,022,373	-		AMB_RS04920	0.58	-1.5
1,022,373	-		AMB_RS04920	0.58	-0.4
1,022,373	-		AMB_RS04920	0.58	-1.1
1,022,486	-		AMB_RS04920	0.67	-1.5
1,022,551	-		AMB_RS04920	0.72	-0.5
1,022,551	-		AMB_RS04920	0.72	-0.4
1,022,551	-		AMB_RS04920	0.72	-0.3
1,022,551	-		AMB_RS04920	0.72	-1.9
1,022,551	-		AMB_RS04920	0.72	-2.7
1,022,551	-		AMB_RS04920	0.72	-1.5
1,022,815	+				+0.5
1,022,816	-				+0.5
1,022,816	-				-1.5
1,022,816	-				-2.1
1,022,816	-				-2.1
1,022,816	-				+0.5
1,022,816	-				-1.9
1,022,817	+				+0.5
1,022,817	+				-0.5
1,022,818	-				-3.0
1,022,825	+				-1.1
1,022,825	+				-0.5
1,022,826	-				-2.0
1,022,826	-				-0.5
1,022,826	-				-1.1
1,022,826	-				+0.5
1,022,826	-				-1.3
1,022,826	-				-5.0
1,022,826	-				-2.6
1,022,826	-				-0.5
1,022,826	-				-3.9
1,022,826	-				-1.5
1,022,826	-				-0.8
1,022,842	-				-0.5
1,022,931	+				-4.7
1,022,931	+				-1.5
1,022,931	+				-0.9
1,022,932	-				-2.4
1,022,932	-				-1.5
1,022,932	-				-1.8
1,022,938	+				-2.7
1,022,938	+				-1.1
1,022,939	-				+0.5
1,022,939	-				-1.1
1,022,939	-				-1.1
1,022,939	-				-2.5
1,023,170	+				+0.5
1,023,170	+				-1.9
1,023,170	+				-0.9
1,023,170	+				-1.9
1,023,170	+				-1.1
1,023,170	+				+0.5
1,023,170	+				-0.1
1,023,170	+				-0.9
1,023,170	+				-5.1
1,023,170	+				+0.5
1,023,171	-				-6.2
1,023,171	-				-1.5
1,023,171	-				-1.5
1,023,171	-				-0.5
1,023,171	-				-0.1
1,023,171	-				-1.1
1,023,171	-				+0.5
1,023,171	-				-5.7
1,023,171	-				-0.1
1,023,171	-				-2.5
1,023,171	-				-1.1
1,023,171	-				-2.5
1,023,220	+				-2.5
1,023,220	+				-2.7
1,023,220	+				-2.1
1,023,221	-				-1.0
1,023,221	-				-1.1
1,023,221	-				+0.5
1,023,221	-				-0.5
1,023,221	-				-5.8
1,023,257	+				+0.5
1,023,257	+				-3.1
1,023,257	+				-0.5
1,023,257	+				+0.5
1,023,257	+				-0.5
1,023,258	-				-4.0
1,023,258	-				-1.9
1,023,447	+		AMB_RS04930	0.14	-1.5
1,023,447	+		AMB_RS04930	0.14	-2.9
1,023,447	+		AMB_RS04930	0.14	-0.5
1,023,447	+		AMB_RS04930	0.14	-4.1
1,023,447	+		AMB_RS04930	0.14	+0.5
1,023,447	+		AMB_RS04930	0.14	+0.0
1,023,447	+		AMB_RS04930	0.14	-6.3
1,023,447	+		AMB_RS04930	0.14	-1.9
1,023,448	-		AMB_RS04930	0.14	-1.1
1,023,448	-		AMB_RS04930	0.14	-2.2
1,023,448	-		AMB_RS04930	0.14	-0.5
1,023,448	-		AMB_RS04930	0.14	+0.5
1,023,448	-		AMB_RS04930	0.14	-2.9
1,023,448	-		AMB_RS04930	0.14	-1.9
1,023,448	-		AMB_RS04930	0.14	+0.5
1,023,448	-		AMB_RS04930	0.14	-1.9
1,023,448	-		AMB_RS04930	0.14	-5.3
1,023,448	-		AMB_RS04930	0.14	+0.5
1,023,448	-		AMB_RS04930	0.14	-1.5
1,023,448	-		AMB_RS04930	0.14	-6.3
1,023,449	+		AMB_RS04930	0.14	+0.5
1,023,449	+		AMB_RS04930	0.14	-4.8
1,023,706	+		AMB_RS04930	0.26	-3.9
1,023,706	+		AMB_RS04930	0.26	+0.5
1,023,706	+		AMB_RS04930	0.26	-1.9
1,023,706	+		AMB_RS04930	0.26	+0.5
1,023,706	+		AMB_RS04930	0.26	+0.5
1,023,706	+		AMB_RS04930	0.26	+0.5
1,023,706	+		AMB_RS04930	0.26	-4.8
1,023,706	+		AMB_RS04930	0.26	-1.1
1,023,706	+		AMB_RS04930	0.26	-4.5
1,023,706	+		AMB_RS04930	0.26	-1.9
1,023,706	+		AMB_RS04930	0.26	+0.5
1,023,706	+		AMB_RS04930	0.26	-1.1
1,023,706	+		AMB_RS04930	0.26	-1.5
1,023,706	+		AMB_RS04930	0.26	+1.5
1,023,706	+		AMB_RS04930	0.26	-5.2
1,023,706	+		AMB_RS04930	0.26	-0.1
1,023,706	+		AMB_RS04930	0.26	-2.1
1,023,706	+		AMB_RS04930	0.26	-2.1
1,023,706	+		AMB_RS04930	0.26	-1.3
1,023,706	+		AMB_RS04930	0.26	+0.5
1,023,706	+		AMB_RS04930	0.26	-0.5
1,023,706	+		AMB_RS04930	0.26	+0.0
1,023,706	+		AMB_RS04930	0.26	-5.1
1,023,707	-		AMB_RS04930	0.26	-1.1
1,023,707	-		AMB_RS04930	0.26	-5.3
1,023,707	-		AMB_RS04930	0.26	-0.5
1,023,707	-		AMB_RS04930	0.26	-4.6
1,023,707	-		AMB_RS04930	0.26	-2.5
1,023,707	-		AMB_RS04930	0.26	-2.4
1,023,707	-		AMB_RS04930	0.26	-5.5
1,023,707	-		AMB_RS04930	0.26	-4.3
1,023,707	-		AMB_RS04930	0.26	-1.9
1,023,707	-		AMB_RS04930	0.26	+0.5
1,023,707	-		AMB_RS04930	0.26	-1.3
1,023,707	-		AMB_RS04930	0.26	+0.5
1,023,707	-		AMB_RS04930	0.26	-4.5
1,023,707	-		AMB_RS04930	0.26	+0.5
1,023,707	-		AMB_RS04930	0.26	-2.3
1,023,707	-		AMB_RS04930	0.26	-2.0
1,023,707	-		AMB_RS04930	0.26	-2.3
1,023,707	-		AMB_RS04930	0.26	-1.1
1,023,707	-		AMB_RS04930	0.26	-2.6
1,023,707	-		AMB_RS04930	0.26	-0.5
1,023,707	-		AMB_RS04930	0.26	+0.5
1,023,707	-		AMB_RS04930	0.26	-1.8
1,023,707	-		AMB_RS04930	0.26	-2.3
1,023,707	-		AMB_RS04930	0.26	+1.0
1,023,707	-		AMB_RS04930	0.26	-1.1
1,023,741	+		AMB_RS04930	0.27	-1.5
1,023,773	-		AMB_RS04930	0.29	-1.1
1,024,084	-		AMB_RS04930	0.43	-0.5
1,024,093	+		AMB_RS04930	0.43	-0.9
1,024,093	+		AMB_RS04930	0.43	-2.5
1,024,093	+		AMB_RS04930	0.43	-0.5
1,024,093	+		AMB_RS04930	0.43	-5.2
1,024,093	+		AMB_RS04930	0.43	-1.5
1,024,093	+		AMB_RS04930	0.43	-2.9
1,024,093	+		AMB_RS04930	0.43	-0.5
1,024,093	+		AMB_RS04930	0.43	+1.5
1,024,093	+		AMB_RS04930	0.43	-1.5
1,024,094	-		AMB_RS04930	0.43	-1.5
1,024,094	-		AMB_RS04930	0.43	-1.0
1,024,094	-		AMB_RS04930	0.43	-1.9
1,024,094	-		AMB_RS04930	0.43	-0.5
1,024,094	-		AMB_RS04930	0.43	+0.5
1,024,094	-		AMB_RS04930	0.43	-1.5
1,024,094	-		AMB_RS04930	0.43	-4.2
1,024,094	-		AMB_RS04930	0.43	-0.5
1,024,094	-		AMB_RS04930	0.43	-4.8
1,024,094	-		AMB_RS04930	0.43	-2.5
1,024,094	-		AMB_RS04930	0.43	+0.5
1,024,094	-		AMB_RS04930	0.43	-2.7
1,024,094	-		AMB_RS04930	0.43	-1.9
1,024,094	-		AMB_RS04930	0.43	+1.5
1,024,094	-		AMB_RS04930	0.43	-4.8
1,024,094	-		AMB_RS04930	0.43	-5.0
1,024,094	-		AMB_RS04930	0.43	-1.9
1,024,094	-		AMB_RS04930	0.43	-0.5
1,024,094	-		AMB_RS04930	0.43	-0.1
1,024,121	+		AMB_RS04930	0.44	-2.3
1,024,121	+		AMB_RS04930	0.44	-1.5
1,024,121	+		AMB_RS04930	0.44	-1.9
1,024,121	+		AMB_RS04930	0.44	-1.9
1,024,121	+		AMB_RS04930	0.44	+0.5
1,024,122	-		AMB_RS04930	0.45	-2.5
1,024,122	-		AMB_RS04930	0.45	+0.5
1,024,122	-		AMB_RS04930	0.45	-2.1
1,024,122	-		AMB_RS04930	0.45	-1.5
1,024,122	-		AMB_RS04930	0.45	-2.9
1,024,122	-		AMB_RS04930	0.45	+0.5
1,024,122	-		AMB_RS04930	0.45	-1.1
1,024,122	-		AMB_RS04930	0.45	-0.5
1,024,284	+		AMB_RS04930	0.52	-0.5
1,024,284	+		AMB_RS04930	0.52	-1.1
1,024,285	-		AMB_RS04930	0.52	+0.5
1,024,566	+		AMB_RS04930	0.65	-5.1
1,024,566	+		AMB_RS04930	0.65	-4.5
1,024,566	+		AMB_RS04930	0.65	+0.5
1,024,566	+		AMB_RS04930	0.65	-0.5
1,024,566	+		AMB_RS04930	0.65	-1.5
1,024,566	+		AMB_RS04930	0.65	-4.3
1,024,566	+		AMB_RS04930	0.65	+0.5
1,024,567	-		AMB_RS04930	0.65	-2.9
1,024,567	-		AMB_RS04930	0.65	-4.3
1,024,567	-		AMB_RS04930	0.65	-4.4
1,024,567	-		AMB_RS04930	0.65	+0.5
1,024,567	-		AMB_RS04930	0.65	-1.1
1,024,567	-		AMB_RS04930	0.65	-0.5
1,024,567	-		AMB_RS04930	0.65	+0.5
1,024,677	-		AMB_RS04930	0.70	-3.4
1,024,719	+		AMB_RS04930	0.72	-0.5
1,024,719	+		AMB_RS04930	0.72	-1.9
1,024,719	+		AMB_RS04930	0.72	+0.5
1,024,719	+		AMB_RS04930	0.72	-0.9
1,024,720	-		AMB_RS04930	0.72	-0.5
1,024,720	-		AMB_RS04930	0.72	-1.9
1,024,720	-		AMB_RS04930	0.72	-6.3
1,024,720	-		AMB_RS04930	0.72	-1.1
1,024,720	-		AMB_RS04930	0.72	-1.1
1,025,214	+				+0.5
1,025,215	-				-5.0
1,025,215	-				-5.7
1,025,215	-				-5.2
1,025,215	-				-1.1
1,025,257	-				+0.5
1,025,358	+				-1.5
1,025,359	-				-1.1
1,025,508	+				-1.5
1,025,509	-				-1.1
1,025,509	-				-0.1
1,025,509	-				+0.5
1,025,509	-				-0.5
1,025,509	-				+0.5
1,025,742	+		AMB_RS23165	0.22	-1.5