Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04915 and AMB_RS04920 are separated by 207 nucleotides AMB_RS04920 and AMB_RS04925 are separated by 36 nucleotides AMB_RS04925 and AMB_RS04930 overlap by 1 nucleotides
AMB_RS04915: AMB_RS04915 - DUF445 domain-containing protein, at 1,020,167 to 1,021,435
_RS04915
AMB_RS04920: AMB_RS04920 - MFS transporter, at 1,021,643 to 1,022,902
_RS04920
AMB_RS04925: AMB_RS04925 - hypothetical protein, at 1,022,939 to 1,023,148
_RS04925
AMB_RS04930: AMB_RS04930 - PDZ domain-containing protein, at 1,023,148 to 1,025,334
_RS04930
Position (kb) 1021
1022
1023 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 1020.864 kb on + strand, within AMB_RS04915 at 1020.865 kb on - strand, within AMB_RS04915 at 1020.882 kb on + strand, within AMB_RS04915 at 1020.882 kb on + strand, within AMB_RS04915 at 1020.883 kb on - strand, within AMB_RS04915 at 1020.883 kb on - strand, within AMB_RS04915 at 1020.883 kb on - strand, within AMB_RS04915 at 1020.883 kb on - strand, within AMB_RS04915 at 1020.883 kb on - strand, within AMB_RS04915 at 1020.883 kb on - strand, within AMB_RS04915 at 1020.982 kb on + strand, within AMB_RS04915 at 1020.983 kb on - strand, within AMB_RS04915 at 1020.983 kb on - strand, within AMB_RS04915 at 1021.363 kb on + strand at 1021.368 kb on + strand at 1021.369 kb on - strand at 1021.491 kb on + strand at 1021.494 kb on - strand at 1021.534 kb on - strand at 1021.548 kb on + strand at 1021.548 kb on + strand at 1021.549 kb on - strand at 1021.579 kb on + strand at 1021.579 kb on + strand at 1021.581 kb on + strand at 1021.581 kb on + strand at 1021.664 kb on + strand at 1021.712 kb on - strand at 1021.742 kb on - strand at 1021.744 kb on + strand at 1021.745 kb on - strand at 1021.745 kb on - strand at 1021.823 kb on + strand, within AMB_RS04920 at 1021.824 kb on - strand, within AMB_RS04920 at 1021.824 kb on - strand, within AMB_RS04920 at 1021.824 kb on - strand, within AMB_RS04920 at 1021.832 kb on + strand, within AMB_RS04920 at 1021.958 kb on + strand, within AMB_RS04920 at 1021.959 kb on - strand, within AMB_RS04920 at 1021.959 kb on - strand, within AMB_RS04920 at 1021.959 kb on - strand, within AMB_RS04920 at 1021.961 kb on + strand, within AMB_RS04920 at 1021.961 kb on + strand, within AMB_RS04920 at 1021.961 kb on + strand, within AMB_RS04920 at 1021.961 kb on + strand, within AMB_RS04920 at 1021.962 kb on - strand, within AMB_RS04920 at 1021.962 kb on - strand, within AMB_RS04920 at 1021.962 kb on - strand, within AMB_RS04920 at 1022.109 kb on - strand, within AMB_RS04920 at 1022.372 kb on + strand, within AMB_RS04920 at 1022.372 kb on + strand, within AMB_RS04920 at 1022.372 kb on + strand, within AMB_RS04920 at 1022.373 kb on - strand, within AMB_RS04920 at 1022.373 kb on - strand, within AMB_RS04920 at 1022.373 kb on - strand, within AMB_RS04920 at 1022.486 kb on - strand, within AMB_RS04920 at 1022.551 kb on - strand, within AMB_RS04920 at 1022.551 kb on - strand, within AMB_RS04920 at 1022.551 kb on - strand, within AMB_RS04920 at 1022.551 kb on - strand, within AMB_RS04920 at 1022.551 kb on - strand, within AMB_RS04920 at 1022.551 kb on - strand, within AMB_RS04920 at 1022.815 kb on + strand at 1022.816 kb on - strand at 1022.816 kb on - strand at 1022.816 kb on - strand at 1022.816 kb on - strand at 1022.816 kb on - strand at 1022.816 kb on - strand at 1022.817 kb on + strand at 1022.817 kb on + strand at 1022.818 kb on - strand at 1022.825 kb on + strand at 1022.825 kb on + strand at 1022.826 kb on - strand at 1022.826 kb on - strand at 1022.826 kb on - strand at 1022.826 kb on - strand at 1022.826 kb on - strand at 1022.826 kb on - strand at 1022.826 kb on - strand at 1022.826 kb on - strand at 1022.826 kb on - strand at 1022.826 kb on - strand at 1022.826 kb on - strand at 1022.842 kb on - strand at 1022.931 kb on + strand at 1022.931 kb on + strand at 1022.931 kb on + strand at 1022.932 kb on - strand at 1022.932 kb on - strand at 1022.932 kb on - strand at 1022.938 kb on + strand at 1022.938 kb on + strand at 1022.939 kb on - strand at 1022.939 kb on - strand at 1022.939 kb on - strand at 1022.939 kb on - strand at 1023.170 kb on + strand at 1023.170 kb on + strand at 1023.170 kb on + strand at 1023.170 kb on + strand at 1023.170 kb on + strand at 1023.170 kb on + strand at 1023.170 kb on + strand at 1023.170 kb on + strand at 1023.170 kb on + strand at 1023.170 kb on + strand at 1023.171 kb on - strand at 1023.171 kb on - strand at 1023.171 kb on - strand at 1023.171 kb on - strand at 1023.171 kb on - strand at 1023.171 kb on - strand at 1023.171 kb on - strand at 1023.171 kb on - strand at 1023.171 kb on - strand at 1023.171 kb on - strand at 1023.171 kb on - strand at 1023.171 kb on - strand at 1023.220 kb on + strand at 1023.220 kb on + strand at 1023.220 kb on + strand at 1023.221 kb on - strand at 1023.221 kb on - strand at 1023.221 kb on - strand at 1023.221 kb on - strand at 1023.221 kb on - strand at 1023.257 kb on + strand at 1023.257 kb on + strand at 1023.257 kb on + strand at 1023.257 kb on + strand at 1023.257 kb on + strand at 1023.258 kb on - strand at 1023.258 kb on - strand at 1023.447 kb on + strand, within AMB_RS04930 at 1023.447 kb on + strand, within AMB_RS04930 at 1023.447 kb on + strand, within AMB_RS04930 at 1023.447 kb on + strand, within AMB_RS04930 at 1023.447 kb on + strand, within AMB_RS04930 at 1023.447 kb on + strand, within AMB_RS04930 at 1023.447 kb on + strand, within AMB_RS04930 at 1023.447 kb on + strand, within AMB_RS04930 at 1023.448 kb on - strand, within AMB_RS04930 at 1023.448 kb on - strand, within AMB_RS04930 at 1023.448 kb on - strand, within AMB_RS04930 at 1023.448 kb on - strand, within AMB_RS04930 at 1023.448 kb on - strand, within AMB_RS04930 at 1023.448 kb on - strand, within AMB_RS04930 at 1023.448 kb on - strand, within AMB_RS04930 at 1023.448 kb on - strand, within AMB_RS04930 at 1023.448 kb on - strand, within AMB_RS04930 at 1023.448 kb on - strand, within AMB_RS04930 at 1023.448 kb on - strand, within AMB_RS04930 at 1023.448 kb on - strand, within AMB_RS04930 at 1023.449 kb on + strand, within AMB_RS04930 at 1023.449 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.706 kb on + strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.707 kb on - strand, within AMB_RS04930 at 1023.741 kb on + strand, within AMB_RS04930 at 1023.773 kb on - strand, within AMB_RS04930
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 1,020,864 + AMB_RS04915 0.55 -1.1 1,020,865 - AMB_RS04915 0.55 -0.9 1,020,882 + AMB_RS04915 0.56 +0.5 1,020,882 + AMB_RS04915 0.56 -2.4 1,020,883 - AMB_RS04915 0.56 -1.9 1,020,883 - AMB_RS04915 0.56 +0.5 1,020,883 - AMB_RS04915 0.56 -1.1 1,020,883 - AMB_RS04915 0.56 -2.5 1,020,883 - AMB_RS04915 0.56 -0.5 1,020,883 - AMB_RS04915 0.56 -0.1 1,020,982 + AMB_RS04915 0.64 -0.5 1,020,983 - AMB_RS04915 0.64 -0.5 1,020,983 - AMB_RS04915 0.64 -1.1 1,021,363 + +0.5 1,021,368 + +0.5 1,021,369 - -0.5 1,021,491 + +0.5 1,021,494 - -0.1 1,021,534 - +0.5 1,021,548 + -0.5 1,021,548 + +0.5 1,021,549 - +0.5 1,021,579 + -0.0 1,021,579 + +0.5 1,021,581 + -0.3 1,021,581 + -1.9 1,021,664 + -1.1 1,021,712 - +0.1 1,021,742 - -1.5 1,021,744 + +0.5 1,021,745 - -0.5 1,021,745 - -2.4 1,021,823 + AMB_RS04920 0.14 +0.5 1,021,824 - AMB_RS04920 0.14 +0.3 1,021,824 - AMB_RS04920 0.14 +0.5 1,021,824 - AMB_RS04920 0.14 -1.9 1,021,832 + AMB_RS04920 0.15 -1.5 1,021,958 + AMB_RS04920 0.25 +0.5 1,021,959 - AMB_RS04920 0.25 -1.9 1,021,959 - AMB_RS04920 0.25 -1.9 1,021,959 - AMB_RS04920 0.25 -0.5 1,021,961 + AMB_RS04920 0.25 -0.5 1,021,961 + AMB_RS04920 0.25 +1.5 1,021,961 + AMB_RS04920 0.25 -2.2 1,021,961 + AMB_RS04920 0.25 +0.5 1,021,962 - AMB_RS04920 0.25 -1.1 1,021,962 - AMB_RS04920 0.25 -2.7 1,021,962 - AMB_RS04920 0.25 -1.9 1,022,109 - AMB_RS04920 0.37 -0.5 1,022,372 + AMB_RS04920 0.58 -1.2 1,022,372 + AMB_RS04920 0.58 +0.5 1,022,372 + AMB_RS04920 0.58 +0.5 1,022,373 - AMB_RS04920 0.58 -1.5 1,022,373 - AMB_RS04920 0.58 -0.4 1,022,373 - AMB_RS04920 0.58 -1.1 1,022,486 - AMB_RS04920 0.67 -1.5 1,022,551 - AMB_RS04920 0.72 -0.5 1,022,551 - AMB_RS04920 0.72 -0.4 1,022,551 - AMB_RS04920 0.72 -0.3 1,022,551 - AMB_RS04920 0.72 -1.9 1,022,551 - AMB_RS04920 0.72 -2.7 1,022,551 - AMB_RS04920 0.72 -1.5 1,022,815 + +0.5 1,022,816 - +0.5 1,022,816 - -1.5 1,022,816 - -2.1 1,022,816 - -2.1 1,022,816 - +0.5 1,022,816 - -1.9 1,022,817 + +0.5 1,022,817 + -0.5 1,022,818 - -3.0 1,022,825 + -1.1 1,022,825 + -0.5 1,022,826 - -2.0 1,022,826 - -0.5 1,022,826 - -1.1 1,022,826 - +0.5 1,022,826 - -1.3 1,022,826 - -5.0 1,022,826 - -2.6 1,022,826 - -0.5 1,022,826 - -3.9 1,022,826 - -1.5 1,022,826 - -0.8 1,022,842 - -0.5 1,022,931 + -4.7 1,022,931 + -1.5 1,022,931 + -0.9 1,022,932 - -2.4 1,022,932 - -1.5 1,022,932 - -1.8 1,022,938 + -2.7 1,022,938 + -1.1 1,022,939 - +0.5 1,022,939 - -1.1 1,022,939 - -1.1 1,022,939 - -2.5 1,023,170 + +0.5 1,023,170 + -1.9 1,023,170 + -0.9 1,023,170 + -1.9 1,023,170 + -1.1 1,023,170 + +0.5 1,023,170 + -0.1 1,023,170 + -0.9 1,023,170 + -5.1 1,023,170 + +0.5 1,023,171 - -6.2 1,023,171 - -1.5 1,023,171 - -1.5 1,023,171 - -0.5 1,023,171 - -0.1 1,023,171 - -1.1 1,023,171 - +0.5 1,023,171 - -5.7 1,023,171 - -0.1 1,023,171 - -2.5 1,023,171 - -1.1 1,023,171 - -2.5 1,023,220 + -2.5 1,023,220 + -2.7 1,023,220 + -2.1 1,023,221 - -1.0 1,023,221 - -1.1 1,023,221 - +0.5 1,023,221 - -0.5 1,023,221 - -5.8 1,023,257 + +0.5 1,023,257 + -3.1 1,023,257 + -0.5 1,023,257 + +0.5 1,023,257 + -0.5 1,023,258 - -4.0 1,023,258 - -1.9 1,023,447 + AMB_RS04930 0.14 -1.5 1,023,447 + AMB_RS04930 0.14 -2.9 1,023,447 + AMB_RS04930 0.14 -0.5 1,023,447 + AMB_RS04930 0.14 -4.1 1,023,447 + AMB_RS04930 0.14 +0.5 1,023,447 + AMB_RS04930 0.14 +0.0 1,023,447 + AMB_RS04930 0.14 -6.3 1,023,447 + AMB_RS04930 0.14 -1.9 1,023,448 - AMB_RS04930 0.14 -1.1 1,023,448 - AMB_RS04930 0.14 -2.2 1,023,448 - AMB_RS04930 0.14 -0.5 1,023,448 - AMB_RS04930 0.14 +0.5 1,023,448 - AMB_RS04930 0.14 -2.9 1,023,448 - AMB_RS04930 0.14 -1.9 1,023,448 - AMB_RS04930 0.14 +0.5 1,023,448 - AMB_RS04930 0.14 -1.9 1,023,448 - AMB_RS04930 0.14 -5.3 1,023,448 - AMB_RS04930 0.14 +0.5 1,023,448 - AMB_RS04930 0.14 -1.5 1,023,448 - AMB_RS04930 0.14 -6.3 1,023,449 + AMB_RS04930 0.14 +0.5 1,023,449 + AMB_RS04930 0.14 -4.8 1,023,706 + AMB_RS04930 0.26 -3.9 1,023,706 + AMB_RS04930 0.26 +0.5 1,023,706 + AMB_RS04930 0.26 -1.9 1,023,706 + AMB_RS04930 0.26 +0.5 1,023,706 + AMB_RS04930 0.26 +0.5 1,023,706 + AMB_RS04930 0.26 +0.5 1,023,706 + AMB_RS04930 0.26 -4.8 1,023,706 + AMB_RS04930 0.26 -1.1 1,023,706 + AMB_RS04930 0.26 -4.5 1,023,706 + AMB_RS04930 0.26 -1.9 1,023,706 + AMB_RS04930 0.26 +0.5 1,023,706 + AMB_RS04930 0.26 -1.1 1,023,706 + AMB_RS04930 0.26 -1.5 1,023,706 + AMB_RS04930 0.26 +1.5 1,023,706 + AMB_RS04930 0.26 -5.2 1,023,706 + AMB_RS04930 0.26 -0.1 1,023,706 + AMB_RS04930 0.26 -2.1 1,023,706 + AMB_RS04930 0.26 -2.1 1,023,706 + AMB_RS04930 0.26 -1.3 1,023,706 + AMB_RS04930 0.26 +0.5 1,023,706 + AMB_RS04930 0.26 -0.5 1,023,706 + AMB_RS04930 0.26 +0.0 1,023,706 + AMB_RS04930 0.26 -5.1 1,023,707 - AMB_RS04930 0.26 -1.1 1,023,707 - AMB_RS04930 0.26 -5.3 1,023,707 - AMB_RS04930 0.26 -0.5 1,023,707 - AMB_RS04930 0.26 -4.6 1,023,707 - AMB_RS04930 0.26 -2.5 1,023,707 - AMB_RS04930 0.26 -2.4 1,023,707 - AMB_RS04930 0.26 -5.5 1,023,707 - AMB_RS04930 0.26 -4.3 1,023,707 - AMB_RS04930 0.26 -1.9 1,023,707 - AMB_RS04930 0.26 +0.5 1,023,707 - AMB_RS04930 0.26 -1.3 1,023,707 - AMB_RS04930 0.26 +0.5 1,023,707 - AMB_RS04930 0.26 -4.5 1,023,707 - AMB_RS04930 0.26 +0.5 1,023,707 - AMB_RS04930 0.26 -2.3 1,023,707 - AMB_RS04930 0.26 -2.0 1,023,707 - AMB_RS04930 0.26 -2.3 1,023,707 - AMB_RS04930 0.26 -1.1 1,023,707 - AMB_RS04930 0.26 -2.6 1,023,707 - AMB_RS04930 0.26 -0.5 1,023,707 - AMB_RS04930 0.26 +0.5 1,023,707 - AMB_RS04930 0.26 -1.8 1,023,707 - AMB_RS04930 0.26 -2.3 1,023,707 - AMB_RS04930 0.26 +1.0 1,023,707 - AMB_RS04930 0.26 -1.1 1,023,741 + AMB_RS04930 0.27 -1.5 1,023,773 - AMB_RS04930 0.29 -1.1
Or see this region's nucleotide sequence