Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04755 and AMB_RS23925 are separated by 20 nucleotides AMB_RS23925 and AMB_RS04760 are separated by 70 nucleotides AMB_RS04760 and AMB_RS04765 overlap by 11 nucleotides AMB_RS04765 and AMB_RS04770 overlap by 55 nucleotides AMB_RS04770 and AMB_RS04775 are separated by 121 nucleotides
AMB_RS04755: AMB_RS04755 - hypothetical protein, at 992,472 to 992,651
_RS04755
AMB_RS23925: AMB_RS23925 - hypothetical protein, at 992,672 to 992,974
_RS23925
AMB_RS04760: AMB_RS04760 - HU family DNA-binding protein, at 993,045 to 993,323
_RS04760
AMB_RS04765: AMB_RS04765 - transcriptional regulator, at 993,313 to 993,726
_RS04765
AMB_RS04770: AMB_RS04770 - IS3 family transposase, at 993,672 to 994,339
_RS04770
AMB_RS04775: AMB_RS04775 - integrase, at 994,461 to 995,318
_RS04775
Position (kb) 993
994 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 992.450 kb on - strand at 992.450 kb on - strand at 992.471 kb on + strand at 992.471 kb on + strand at 992.649 kb on + strand at 992.649 kb on + strand at 992.725 kb on - strand, within AMB_RS23925 at 992.844 kb on + strand, within AMB_RS23925 at 992.953 kb on + strand at 992.953 kb on + strand at 992.953 kb on + strand at 992.953 kb on + strand at 992.972 kb on + strand at 992.973 kb on - strand at 992.973 kb on - strand at 992.996 kb on + strand at 992.996 kb on + strand at 992.996 kb on + strand at 992.997 kb on - strand at 992.997 kb on - strand at 992.997 kb on - strand at 992.997 kb on - strand at 993.017 kb on + strand at 993.622 kb on + strand, within AMB_RS04765 at 993.687 kb on + strand at 993.706 kb on - strand at 993.847 kb on + strand, within AMB_RS04770 at 993.848 kb on - strand, within AMB_RS04770 at 993.952 kb on + strand, within AMB_RS04770 at 993.952 kb on + strand, within AMB_RS04770 at 993.996 kb on + strand, within AMB_RS04770 at 993.996 kb on + strand, within AMB_RS04770 at 993.996 kb on + strand, within AMB_RS04770 at 993.996 kb on + strand, within AMB_RS04770 at 993.996 kb on + strand, within AMB_RS04770 at 993.996 kb on + strand, within AMB_RS04770 at 993.997 kb on - strand, within AMB_RS04770 at 993.997 kb on - strand, within AMB_RS04770 at 993.997 kb on - strand, within AMB_RS04770 at 993.997 kb on - strand, within AMB_RS04770 at 993.997 kb on - strand, within AMB_RS04770 at 993.997 kb on - strand, within AMB_RS04770 at 993.997 kb on - strand, within AMB_RS04770 at 993.997 kb on - strand, within AMB_RS04770 at 994.114 kb on - strand, within AMB_RS04770 at 994.226 kb on + strand, within AMB_RS04770 at 994.337 kb on + strand at 994.338 kb on - strand at 994.338 kb on - strand at 994.490 kb on + strand at 994.491 kb on - strand at 994.491 kb on - strand at 994.491 kb on - strand at 994.542 kb on + strand at 994.542 kb on + strand at 994.543 kb on - strand at 994.543 kb on - strand at 994.543 kb on - strand at 994.647 kb on - strand, within AMB_RS04775 at 994.647 kb on - strand, within AMB_RS04775 at 994.695 kb on + strand, within AMB_RS04775 at 994.695 kb on + strand, within AMB_RS04775 at 994.695 kb on + strand, within AMB_RS04775 at 994.696 kb on - strand, within AMB_RS04775
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 992,450 - -0.8 992,450 - +0.5 992,471 + +1.5 992,471 + -0.5 992,649 + -0.5 992,649 + +0.5 992,725 - AMB_RS23925 0.17 -1.1 992,844 + AMB_RS23925 0.57 -1.1 992,953 + +0.5 992,953 + -1.9 992,953 + +0.5 992,953 + -1.9 992,972 + -1.1 992,973 - -2.9 992,973 - -0.2 992,996 + +0.3 992,996 + -0.5 992,996 + +0.5 992,997 - -0.5 992,997 - -1.9 992,997 - -1.5 992,997 - +0.0 993,017 + -0.2 993,622 + AMB_RS04765 0.75 -1.5 993,687 + +0.5 993,706 - -3.1 993,847 + AMB_RS04770 0.26 -2.4 993,848 - AMB_RS04770 0.26 -0.1 993,952 + AMB_RS04770 0.42 +0.5 993,952 + AMB_RS04770 0.42 -2.4 993,996 + AMB_RS04770 0.49 -3.1 993,996 + AMB_RS04770 0.49 -0.7 993,996 + AMB_RS04770 0.49 -2.4 993,996 + AMB_RS04770 0.49 +0.5 993,996 + AMB_RS04770 0.49 -1.1 993,996 + AMB_RS04770 0.49 -2.1 993,997 - AMB_RS04770 0.49 -0.5 993,997 - AMB_RS04770 0.49 -1.1 993,997 - AMB_RS04770 0.49 -1.9 993,997 - AMB_RS04770 0.49 -1.5 993,997 - AMB_RS04770 0.49 -3.0 993,997 - AMB_RS04770 0.49 -0.5 993,997 - AMB_RS04770 0.49 +0.5 993,997 - AMB_RS04770 0.49 -1.5 994,114 - AMB_RS04770 0.66 -0.1 994,226 + AMB_RS04770 0.83 +0.5 994,337 + -0.5 994,338 - -0.5 994,338 - -2.5 994,490 + -1.0 994,491 - +0.5 994,491 - -0.5 994,491 - -2.1 994,542 + +0.4 994,542 + -1.1 994,543 - +0.5 994,543 - -0.5 994,543 - -0.6 994,647 - AMB_RS04775 0.22 +0.5 994,647 - AMB_RS04775 0.22 -2.7 994,695 + AMB_RS04775 0.27 +0.1 994,695 + AMB_RS04775 0.27 -0.5 994,695 + AMB_RS04775 0.27 -0.1 994,696 - AMB_RS04775 0.27 -0.2
Or see this region's nucleotide sequence