Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04540 and AMB_RS04545 overlap by 4 nucleotides AMB_RS04545 and AMB_RS04550 are separated by 4 nucleotides
AMB_RS04540: AMB_RS04540 - C4-dicarboxylate ABC transporter, at 950,283 to 952,346
_RS04540
AMB_RS04545: AMB_RS04545 - DUF1850 domain-containing protein, at 952,343 to 952,699
_RS04545
AMB_RS04550: AMB_RS04550 - C4-dicarboxylate ABC transporter permease, at 952,704 to 953,987
_RS04550
Position (kb) 952
953 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 951.345 kb on + strand, within AMB_RS04540 at 951.345 kb on + strand, within AMB_RS04540 at 951.346 kb on - strand, within AMB_RS04540 at 951.346 kb on - strand, within AMB_RS04540 at 951.346 kb on - strand, within AMB_RS04540 at 951.375 kb on + strand, within AMB_RS04540 at 951.375 kb on + strand, within AMB_RS04540 at 951.376 kb on - strand, within AMB_RS04540 at 951.376 kb on - strand, within AMB_RS04540 at 951.846 kb on + strand, within AMB_RS04540 at 951.846 kb on + strand, within AMB_RS04540 at 951.846 kb on + strand, within AMB_RS04540 at 951.846 kb on + strand, within AMB_RS04540 at 951.846 kb on + strand, within AMB_RS04540 at 951.846 kb on + strand, within AMB_RS04540 at 951.846 kb on + strand, within AMB_RS04540 at 951.846 kb on + strand, within AMB_RS04540 at 951.846 kb on + strand, within AMB_RS04540 at 951.846 kb on + strand, within AMB_RS04540 at 951.846 kb on + strand, within AMB_RS04540 at 951.847 kb on - strand, within AMB_RS04540 at 951.847 kb on - strand, within AMB_RS04540 at 951.847 kb on - strand, within AMB_RS04540 at 951.847 kb on - strand, within AMB_RS04540 at 951.847 kb on - strand, within AMB_RS04540 at 951.847 kb on - strand, within AMB_RS04540 at 951.847 kb on - strand, within AMB_RS04540 at 951.847 kb on - strand, within AMB_RS04540 at 951.847 kb on - strand, within AMB_RS04540 at 951.847 kb on - strand, within AMB_RS04540 at 951.918 kb on + strand, within AMB_RS04540 at 951.918 kb on + strand, within AMB_RS04540 at 951.918 kb on + strand, within AMB_RS04540 at 951.918 kb on + strand, within AMB_RS04540 at 951.918 kb on + strand, within AMB_RS04540 at 951.918 kb on + strand, within AMB_RS04540 at 951.918 kb on + strand, within AMB_RS04540 at 951.918 kb on + strand, within AMB_RS04540 at 951.918 kb on + strand, within AMB_RS04540 at 951.918 kb on + strand, within AMB_RS04540 at 951.918 kb on + strand, within AMB_RS04540 at 951.918 kb on + strand, within AMB_RS04540 at 951.918 kb on + strand, within AMB_RS04540 at 951.918 kb on + strand, within AMB_RS04540 at 951.918 kb on + strand, within AMB_RS04540 at 951.918 kb on + strand, within AMB_RS04540 at 951.918 kb on + strand, within AMB_RS04540 at 951.919 kb on - strand, within AMB_RS04540 at 951.919 kb on - strand, within AMB_RS04540 at 951.919 kb on - strand, within AMB_RS04540 at 951.919 kb on - strand, within AMB_RS04540 at 951.919 kb on - strand, within AMB_RS04540 at 951.919 kb on - strand, within AMB_RS04540 at 951.919 kb on - strand, within AMB_RS04540 at 951.919 kb on - strand, within AMB_RS04540 at 951.919 kb on - strand, within AMB_RS04540 at 951.919 kb on - strand, within AMB_RS04540 at 951.919 kb on - strand, within AMB_RS04540 at 951.919 kb on - strand, within AMB_RS04540 at 952.074 kb on + strand, within AMB_RS04540 at 952.074 kb on + strand, within AMB_RS04540 at 952.074 kb on + strand, within AMB_RS04540 at 952.074 kb on + strand, within AMB_RS04540 at 952.074 kb on + strand, within AMB_RS04540 at 952.074 kb on + strand, within AMB_RS04540 at 952.074 kb on + strand, within AMB_RS04540 at 952.075 kb on - strand, within AMB_RS04540 at 952.122 kb on + strand, within AMB_RS04540 at 952.122 kb on + strand, within AMB_RS04540 at 952.122 kb on + strand, within AMB_RS04540 at 952.122 kb on + strand, within AMB_RS04540 at 952.122 kb on + strand, within AMB_RS04540 at 952.122 kb on + strand, within AMB_RS04540 at 952.122 kb on + strand, within AMB_RS04540 at 952.122 kb on + strand, within AMB_RS04540 at 952.122 kb on + strand, within AMB_RS04540 at 952.123 kb on - strand, within AMB_RS04540 at 952.123 kb on - strand, within AMB_RS04540 at 952.180 kb on - strand at 952.180 kb on - strand at 952.705 kb on + strand at 952.705 kb on + strand at 952.705 kb on + strand at 952.705 kb on + strand at 952.706 kb on - strand at 952.706 kb on - strand at 952.706 kb on - strand at 952.753 kb on + strand at 952.754 kb on - strand at 952.754 kb on - strand at 952.754 kb on - strand at 952.852 kb on + strand, within AMB_RS04550 at 952.852 kb on + strand, within AMB_RS04550 at 952.853 kb on - strand, within AMB_RS04550 at 952.853 kb on - strand, within AMB_RS04550 at 952.853 kb on - strand, within AMB_RS04550 at 952.853 kb on - strand, within AMB_RS04550 at 952.853 kb on - strand, within AMB_RS04550 at 952.853 kb on - strand, within AMB_RS04550 at 952.853 kb on - strand, within AMB_RS04550 at 953.149 kb on + strand, within AMB_RS04550 at 953.149 kb on + strand, within AMB_RS04550 at 953.149 kb on + strand, within AMB_RS04550 at 953.149 kb on + strand, within AMB_RS04550 at 953.150 kb on - strand, within AMB_RS04550 at 953.150 kb on - strand, within AMB_RS04550 at 953.150 kb on - strand, within AMB_RS04550 at 953.214 kb on - strand, within AMB_RS04550 at 953.221 kb on + strand, within AMB_RS04550 at 953.222 kb on - strand, within AMB_RS04550 at 953.222 kb on - strand, within AMB_RS04550 at 953.294 kb on + strand, within AMB_RS04550 at 953.296 kb on + strand, within AMB_RS04550 at 953.296 kb on + strand, within AMB_RS04550 at 953.296 kb on + strand, within AMB_RS04550 at 953.296 kb on + strand, within AMB_RS04550 at 953.296 kb on + strand, within AMB_RS04550 at 953.296 kb on + strand, within AMB_RS04550 at 953.296 kb on + strand, within AMB_RS04550 at 953.297 kb on - strand, within AMB_RS04550 at 953.297 kb on - strand, within AMB_RS04550 at 953.297 kb on - strand, within AMB_RS04550 at 953.297 kb on - strand, within AMB_RS04550 at 953.297 kb on - strand, within AMB_RS04550 at 953.297 kb on - strand, within AMB_RS04550 at 953.297 kb on - strand, within AMB_RS04550 at 953.297 kb on - strand, within AMB_RS04550 at 953.395 kb on + strand, within AMB_RS04550 at 953.396 kb on - strand, within AMB_RS04550 at 953.396 kb on - strand, within AMB_RS04550 at 953.396 kb on - strand, within AMB_RS04550 at 953.396 kb on - strand, within AMB_RS04550 at 953.416 kb on + strand, within AMB_RS04550 at 953.417 kb on - strand, within AMB_RS04550 at 953.512 kb on + strand, within AMB_RS04550 at 953.513 kb on - strand, within AMB_RS04550
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 951,345 + AMB_RS04540 0.51 -0.5 951,345 + AMB_RS04540 0.51 -0.5 951,346 - AMB_RS04540 0.52 -1.1 951,346 - AMB_RS04540 0.52 -0.7 951,346 - AMB_RS04540 0.52 -1.1 951,375 + AMB_RS04540 0.53 -1.1 951,375 + AMB_RS04540 0.53 +0.5 951,376 - AMB_RS04540 0.53 -4.1 951,376 - AMB_RS04540 0.53 +0.5 951,846 + AMB_RS04540 0.76 -0.5 951,846 + AMB_RS04540 0.76 +0.5 951,846 + AMB_RS04540 0.76 -2.9 951,846 + AMB_RS04540 0.76 -2.1 951,846 + AMB_RS04540 0.76 -2.9 951,846 + AMB_RS04540 0.76 -0.3 951,846 + AMB_RS04540 0.76 -0.5 951,846 + AMB_RS04540 0.76 -0.2 951,846 + AMB_RS04540 0.76 -0.5 951,846 + AMB_RS04540 0.76 +0.5 951,846 + AMB_RS04540 0.76 -0.5 951,847 - AMB_RS04540 0.76 -0.5 951,847 - AMB_RS04540 0.76 -0.9 951,847 - AMB_RS04540 0.76 -2.9 951,847 - AMB_RS04540 0.76 -0.5 951,847 - AMB_RS04540 0.76 -1.3 951,847 - AMB_RS04540 0.76 -0.5 951,847 - AMB_RS04540 0.76 -1.1 951,847 - AMB_RS04540 0.76 -1.9 951,847 - AMB_RS04540 0.76 -0.5 951,847 - AMB_RS04540 0.76 +0.1 951,918 + AMB_RS04540 0.79 -1.9 951,918 + AMB_RS04540 0.79 -0.5 951,918 + AMB_RS04540 0.79 +0.5 951,918 + AMB_RS04540 0.79 -1.5 951,918 + AMB_RS04540 0.79 -1.1 951,918 + AMB_RS04540 0.79 -0.5 951,918 + AMB_RS04540 0.79 -1.1 951,918 + AMB_RS04540 0.79 -0.9 951,918 + AMB_RS04540 0.79 +0.5 951,918 + AMB_RS04540 0.79 -1.1 951,918 + AMB_RS04540 0.79 -1.1 951,918 + AMB_RS04540 0.79 -1.5 951,918 + AMB_RS04540 0.79 +2.6 951,918 + AMB_RS04540 0.79 +0.5 951,918 + AMB_RS04540 0.79 +0.5 951,918 + AMB_RS04540 0.79 -2.3 951,918 + AMB_RS04540 0.79 -1.1 951,919 - AMB_RS04540 0.79 -1.9 951,919 - AMB_RS04540 0.79 +0.1 951,919 - AMB_RS04540 0.79 +0.5 951,919 - AMB_RS04540 0.79 -0.2 951,919 - AMB_RS04540 0.79 +0.5 951,919 - AMB_RS04540 0.79 -3.1 951,919 - AMB_RS04540 0.79 -0.0 951,919 - AMB_RS04540 0.79 -0.5 951,919 - AMB_RS04540 0.79 -2.7 951,919 - AMB_RS04540 0.79 -1.9 951,919 - AMB_RS04540 0.79 +0.5 951,919 - AMB_RS04540 0.79 -1.1 952,074 + AMB_RS04540 0.87 -1.5 952,074 + AMB_RS04540 0.87 -1.9 952,074 + AMB_RS04540 0.87 -0.5 952,074 + AMB_RS04540 0.87 -0.9 952,074 + AMB_RS04540 0.87 -2.5 952,074 + AMB_RS04540 0.87 +0.4 952,074 + AMB_RS04540 0.87 -1.1 952,075 - AMB_RS04540 0.87 -0.5 952,122 + AMB_RS04540 0.89 -0.5 952,122 + AMB_RS04540 0.89 +0.5 952,122 + AMB_RS04540 0.89 +0.5 952,122 + AMB_RS04540 0.89 -0.4 952,122 + AMB_RS04540 0.89 -0.4 952,122 + AMB_RS04540 0.89 +0.5 952,122 + AMB_RS04540 0.89 -1.5 952,122 + AMB_RS04540 0.89 -0.5 952,122 + AMB_RS04540 0.89 -1.5 952,123 - AMB_RS04540 0.89 -0.4 952,123 - AMB_RS04540 0.89 -1.5 952,180 - -0.5 952,180 - -0.5 952,705 + -2.1 952,705 + -1.5 952,705 + -0.5 952,705 + +0.5 952,706 - -0.5 952,706 - -0.5 952,706 - -2.1 952,753 + -0.5 952,754 - -1.1 952,754 - +0.5 952,754 - -2.1 952,852 + AMB_RS04550 0.12 -2.1 952,852 + AMB_RS04550 0.12 +0.5 952,853 - AMB_RS04550 0.12 -1.5 952,853 - AMB_RS04550 0.12 -0.5 952,853 - AMB_RS04550 0.12 +0.5 952,853 - AMB_RS04550 0.12 -0.5 952,853 - AMB_RS04550 0.12 -0.5 952,853 - AMB_RS04550 0.12 +0.0 952,853 - AMB_RS04550 0.12 +0.5 953,149 + AMB_RS04550 0.35 +0.5 953,149 + AMB_RS04550 0.35 -1.9 953,149 + AMB_RS04550 0.35 -0.1 953,149 + AMB_RS04550 0.35 +0.5 953,150 - AMB_RS04550 0.35 -0.5 953,150 - AMB_RS04550 0.35 -3.5 953,150 - AMB_RS04550 0.35 -0.5 953,214 - AMB_RS04550 0.40 -0.5 953,221 + AMB_RS04550 0.40 +0.5 953,222 - AMB_RS04550 0.40 -2.5 953,222 - AMB_RS04550 0.40 +0.5 953,294 + AMB_RS04550 0.46 -0.5 953,296 + AMB_RS04550 0.46 +0.5 953,296 + AMB_RS04550 0.46 -0.5 953,296 + AMB_RS04550 0.46 -0.5 953,296 + AMB_RS04550 0.46 -1.1 953,296 + AMB_RS04550 0.46 -0.7 953,296 + AMB_RS04550 0.46 -3.6 953,296 + AMB_RS04550 0.46 -0.5 953,297 - AMB_RS04550 0.46 -0.5 953,297 - AMB_RS04550 0.46 -0.5 953,297 - AMB_RS04550 0.46 -0.3 953,297 - AMB_RS04550 0.46 -2.4 953,297 - AMB_RS04550 0.46 -1.5 953,297 - AMB_RS04550 0.46 +1.5 953,297 - AMB_RS04550 0.46 -1.1 953,297 - AMB_RS04550 0.46 -1.1 953,395 + AMB_RS04550 0.54 -2.4 953,396 - AMB_RS04550 0.54 -0.4 953,396 - AMB_RS04550 0.54 -0.5 953,396 - AMB_RS04550 0.54 -1.5 953,396 - AMB_RS04550 0.54 -0.5 953,416 + AMB_RS04550 0.55 -0.5 953,417 - AMB_RS04550 0.56 +0.5 953,512 + AMB_RS04550 0.63 -0.5 953,513 - AMB_RS04550 0.63 -0.5
Or see this region's nucleotide sequence