Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04530

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04525 and AMB_RS04530 are separated by 127 nucleotidesAMB_RS04530 and AMB_RS04535 are separated by 41 nucleotides AMB_RS04525: AMB_RS04525 - molecular chaperone DnaJ, at 947,217 to 948,137 _RS04525 AMB_RS04530: AMB_RS04530 - hypothetical protein, at 948,265 to 949,281 _RS04530 AMB_RS04535: AMB_RS04535 - C4-dicarboxylate ABC transporter, at 949,323 to 950,261 _RS04535 Position (kb) 948 949 950Strain fitness (log2 ratio) -3 -2 -1 0 1at 947.284 kb on - strandat 947.284 kb on - strandat 947.370 kb on + strand, within AMB_RS04525at 947.370 kb on + strand, within AMB_RS04525at 948.105 kb on + strandat 948.188 kb on - strandat 948.267 kb on - strandat 948.267 kb on - strandat 948.849 kb on - strand, within AMB_RS04530at 949.274 kb on - strandat 949.294 kb on + strandat 949.294 kb on + strandat 949.294 kb on + strandat 949.294 kb on + strandat 949.295 kb on - strandat 949.295 kb on - strandat 949.295 kb on - strandat 949.295 kb on - strandat 949.298 kb on - strandat 949.298 kb on - strandat 949.336 kb on + strandat 949.337 kb on - strandat 949.428 kb on + strand, within AMB_RS04535at 949.428 kb on + strand, within AMB_RS04535at 949.428 kb on + strand, within AMB_RS04535at 949.429 kb on - strand, within AMB_RS04535at 949.431 kb on + strand, within AMB_RS04535at 949.462 kb on - strand, within AMB_RS04535at 949.462 kb on - strand, within AMB_RS04535at 949.614 kb on + strand, within AMB_RS04535at 949.615 kb on - strand, within AMB_RS04535at 949.615 kb on - strand, within AMB_RS04535at 949.656 kb on + strand, within AMB_RS04535at 949.656 kb on + strand, within AMB_RS04535at 949.656 kb on + strand, within AMB_RS04535at 949.656 kb on + strand, within AMB_RS04535at 949.656 kb on + strand, within AMB_RS04535at 949.656 kb on + strand, within AMB_RS04535at 949.657 kb on - strand, within AMB_RS04535at 949.657 kb on - strand, within AMB_RS04535at 949.657 kb on - strand, within AMB_RS04535at 949.657 kb on - strand, within AMB_RS04535at 949.657 kb on - strand, within AMB_RS04535at 949.665 kb on + strand, within AMB_RS04535at 949.665 kb on + strand, within AMB_RS04535at 949.665 kb on + strand, within AMB_RS04535at 949.666 kb on - strand, within AMB_RS04535at 949.666 kb on - strand, within AMB_RS04535at 949.666 kb on - strand, within AMB_RS04535at 949.666 kb on - strand, within AMB_RS04535at 949.666 kb on - strand, within AMB_RS04535at 949.804 kb on - strand, within AMB_RS04535at 949.825 kb on - strand, within AMB_RS04535at 949.825 kb on - strand, within AMB_RS04535at 949.992 kb on + strand, within AMB_RS04535at 949.992 kb on + strand, within AMB_RS04535at 949.992 kb on + strand, within AMB_RS04535at 949.993 kb on - strand, within AMB_RS04535at 949.993 kb on - strand, within AMB_RS04535at 949.993 kb on - strand, within AMB_RS04535at 949.993 kb on - strand, within AMB_RS04535at 949.995 kb on - strand, within AMB_RS04535at 950.018 kb on + strand, within AMB_RS04535at 950.018 kb on + strand, within AMB_RS04535at 950.019 kb on - strand, within AMB_RS04535at 950.019 kb on - strand, within AMB_RS04535at 950.019 kb on - strand, within AMB_RS04535at 950.023 kb on - strand, within AMB_RS04535at 950.023 kb on - strand, within AMB_RS04535at 950.023 kb on - strand, within AMB_RS04535at 950.106 kb on + strand, within AMB_RS04535at 950.106 kb on + strand, within AMB_RS04535at 950.106 kb on + strand, within AMB_RS04535at 950.106 kb on + strand, within AMB_RS04535at 950.106 kb on + strand, within AMB_RS04535at 950.107 kb on - strand, within AMB_RS04535at 950.107 kb on - strand, within AMB_RS04535at 950.107 kb on - strand, within AMB_RS04535at 950.107 kb on - strand, within AMB_RS04535at 950.232 kb on + strandat 950.233 kb on - strandat 950.235 kb on + strandat 950.236 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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947,284 - -1.1
947,284 - -0.5
947,370 + AMB_RS04525 0.17 -1.9
947,370 + AMB_RS04525 0.17 -1.1
948,105 + +0.5
948,188 - +0.5
948,267 - -0.5
948,267 - -0.5
948,849 - AMB_RS04530 0.57 +0.5
949,274 - -1.1
949,294 + -0.0
949,294 + -0.5
949,294 + -0.0
949,294 + -1.1
949,295 - -0.5
949,295 - -0.5
949,295 - -1.9
949,295 - -1.9
949,298 - -2.7
949,298 - -2.9
949,336 + +0.5
949,337 - -1.9
949,428 + AMB_RS04535 0.11 +0.5
949,428 + AMB_RS04535 0.11 -1.1
949,428 + AMB_RS04535 0.11 -0.9
949,429 - AMB_RS04535 0.11 -0.3
949,431 + AMB_RS04535 0.12 -0.7
949,462 - AMB_RS04535 0.15 -0.0
949,462 - AMB_RS04535 0.15 -0.5
949,614 + AMB_RS04535 0.31 -0.5
949,615 - AMB_RS04535 0.31 -0.1
949,615 - AMB_RS04535 0.31 -0.2
949,656 + AMB_RS04535 0.35 -2.7
949,656 + AMB_RS04535 0.35 -0.3
949,656 + AMB_RS04535 0.35 +0.2
949,656 + AMB_RS04535 0.35 -3.0
949,656 + AMB_RS04535 0.35 -1.1
949,656 + AMB_RS04535 0.35 -1.9
949,657 - AMB_RS04535 0.36 -1.5
949,657 - AMB_RS04535 0.36 -1.1
949,657 - AMB_RS04535 0.36 +0.5
949,657 - AMB_RS04535 0.36 -1.1
949,657 - AMB_RS04535 0.36 -3.7
949,665 + AMB_RS04535 0.36 -0.5
949,665 + AMB_RS04535 0.36 -1.1
949,665 + AMB_RS04535 0.36 -1.1
949,666 - AMB_RS04535 0.37 -1.1
949,666 - AMB_RS04535 0.37 -0.5
949,666 - AMB_RS04535 0.37 -1.1
949,666 - AMB_RS04535 0.37 +0.5
949,666 - AMB_RS04535 0.37 -2.1
949,804 - AMB_RS04535 0.51 -1.5
949,825 - AMB_RS04535 0.53 -0.5
949,825 - AMB_RS04535 0.53 -1.9
949,992 + AMB_RS04535 0.71 -2.9
949,992 + AMB_RS04535 0.71 -0.5
949,992 + AMB_RS04535 0.71 +0.2
949,993 - AMB_RS04535 0.71 +0.5
949,993 - AMB_RS04535 0.71 +0.5
949,993 - AMB_RS04535 0.71 -3.0
949,993 - AMB_RS04535 0.71 -1.1
949,995 - AMB_RS04535 0.72 -2.1
950,018 + AMB_RS04535 0.74 +0.5
950,018 + AMB_RS04535 0.74 -2.3
950,019 - AMB_RS04535 0.74 -0.1
950,019 - AMB_RS04535 0.74 +0.5
950,019 - AMB_RS04535 0.74 +0.5
950,023 - AMB_RS04535 0.75 -1.1
950,023 - AMB_RS04535 0.75 -2.1
950,023 - AMB_RS04535 0.75 -3.0
950,106 + AMB_RS04535 0.83 -0.5
950,106 + AMB_RS04535 0.83 +1.1
950,106 + AMB_RS04535 0.83 +0.5
950,106 + AMB_RS04535 0.83 -0.5
950,106 + AMB_RS04535 0.83 -1.1
950,107 - AMB_RS04535 0.83 +0.5
950,107 - AMB_RS04535 0.83 +0.5
950,107 - AMB_RS04535 0.83 -3.4
950,107 - AMB_RS04535 0.83 +0.5
950,232 + -2.3
950,233 - -2.3
950,235 + +0.5
950,236 - +0.0

Or see this region's nucleotide sequence