Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04415 and AMB_RS04420 are separated by 215 nucleotides AMB_RS04420 and AMB_RS04425 are separated by 83 nucleotides AMB_RS04425 and AMB_RS04430 are separated by 26 nucleotides AMB_RS04430 and AMB_RS04435 are separated by 234 nucleotides
AMB_RS04415: AMB_RS04415 - NAD-dependent protein deacylase, at 927,423 to 928,145
_RS04415
AMB_RS04420: AMB_RS04420 - hypothetical protein, at 928,361 to 928,975
_RS04420
AMB_RS04425: AMB_RS04425 - low molecular weight phosphotyrosine protein phosphatase, at 929,059 to 929,532
_RS04425
AMB_RS04430: AMB_RS04430 - hypothetical protein, at 929,559 to 930,002
_RS04430
AMB_RS04435: AMB_RS04435 - hypothetical protein, at 930,237 to 931,745
_RS04435
Position (kb) 929
930 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 928.264 kb on + strand at 928.625 kb on + strand, within AMB_RS04420 at 928.625 kb on + strand, within AMB_RS04420 at 928.625 kb on + strand, within AMB_RS04420 at 928.625 kb on + strand, within AMB_RS04420 at 928.625 kb on + strand, within AMB_RS04420 at 928.625 kb on + strand, within AMB_RS04420 at 928.626 kb on - strand, within AMB_RS04420 at 928.733 kb on + strand, within AMB_RS04420 at 928.733 kb on + strand, within AMB_RS04420 at 928.733 kb on + strand, within AMB_RS04420 at 928.733 kb on + strand, within AMB_RS04420 at 928.733 kb on + strand, within AMB_RS04420 at 928.733 kb on + strand, within AMB_RS04420 at 928.733 kb on + strand, within AMB_RS04420 at 928.734 kb on - strand, within AMB_RS04420 at 928.734 kb on - strand, within AMB_RS04420 at 928.734 kb on - strand, within AMB_RS04420 at 928.734 kb on - strand, within AMB_RS04420 at 928.734 kb on - strand, within AMB_RS04420 at 928.764 kb on - strand, within AMB_RS04420 at 929.091 kb on + strand at 929.091 kb on + strand at 929.091 kb on + strand at 929.091 kb on + strand at 929.091 kb on + strand at 929.092 kb on - strand at 929.092 kb on - strand at 929.092 kb on - strand at 929.092 kb on - strand at 929.092 kb on - strand at 929.191 kb on + strand, within AMB_RS04425 at 929.192 kb on - strand, within AMB_RS04425 at 929.192 kb on - strand, within AMB_RS04425 at 929.192 kb on - strand, within AMB_RS04425 at 929.192 kb on - strand, within AMB_RS04425 at 929.249 kb on - strand, within AMB_RS04425 at 929.249 kb on - strand, within AMB_RS04425 at 929.438 kb on - strand, within AMB_RS04425 at 929.438 kb on - strand, within AMB_RS04425 at 929.531 kb on - strand at 929.538 kb on + strand at 929.538 kb on + strand at 929.548 kb on - strand at 929.584 kb on + strand at 929.584 kb on + strand at 929.584 kb on + strand at 929.585 kb on - strand at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.725 kb on + strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.726 kb on - strand, within AMB_RS04430 at 929.881 kb on + strand, within AMB_RS04430 at 929.881 kb on + strand, within AMB_RS04430 at 929.881 kb on + strand, within AMB_RS04430 at 929.882 kb on - strand, within AMB_RS04430 at 929.894 kb on - strand, within AMB_RS04430 at 929.956 kb on + strand, within AMB_RS04430 at 929.956 kb on + strand, within AMB_RS04430 at 929.956 kb on + strand, within AMB_RS04430 at 929.956 kb on + strand, within AMB_RS04430 at 929.956 kb on + strand, within AMB_RS04430 at 929.956 kb on + strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 929.957 kb on - strand, within AMB_RS04430 at 930.006 kb on + strand at 930.007 kb on - strand at 930.007 kb on - strand at 930.117 kb on + strand at 930.137 kb on + strand at 930.138 kb on - strand at 930.138 kb on - strand at 930.320 kb on + strand at 930.321 kb on - strand at 930.507 kb on + strand, within AMB_RS04435 at 930.508 kb on - strand, within AMB_RS04435 at 930.508 kb on - strand, within AMB_RS04435
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 928,264 + -1.5 928,625 + AMB_RS04420 0.43 -3.8 928,625 + AMB_RS04420 0.43 +0.5 928,625 + AMB_RS04420 0.43 -1.9 928,625 + AMB_RS04420 0.43 +0.5 928,625 + AMB_RS04420 0.43 -0.2 928,625 + AMB_RS04420 0.43 +0.5 928,626 - AMB_RS04420 0.43 -0.5 928,733 + AMB_RS04420 0.60 -2.3 928,733 + AMB_RS04420 0.60 +0.5 928,733 + AMB_RS04420 0.60 -1.5 928,733 + AMB_RS04420 0.60 -1.9 928,733 + AMB_RS04420 0.60 -0.5 928,733 + AMB_RS04420 0.60 +0.4 928,733 + AMB_RS04420 0.60 +0.5 928,734 - AMB_RS04420 0.61 +1.5 928,734 - AMB_RS04420 0.61 -1.1 928,734 - AMB_RS04420 0.61 +0.5 928,734 - AMB_RS04420 0.61 -1.1 928,734 - AMB_RS04420 0.61 -1.5 928,764 - AMB_RS04420 0.66 -0.5 929,091 + -0.2 929,091 + -1.1 929,091 + -0.5 929,091 + -0.5 929,091 + +0.5 929,092 - -1.5 929,092 - -0.5 929,092 - -1.5 929,092 - -0.5 929,092 - +0.5 929,191 + AMB_RS04425 0.28 -1.1 929,192 - AMB_RS04425 0.28 -1.1 929,192 - AMB_RS04425 0.28 -1.1 929,192 - AMB_RS04425 0.28 -1.1 929,192 - AMB_RS04425 0.28 -0.5 929,249 - AMB_RS04425 0.40 +0.5 929,249 - AMB_RS04425 0.40 -0.9 929,438 - AMB_RS04425 0.80 -1.1 929,438 - AMB_RS04425 0.80 -2.3 929,531 - -3.9 929,538 + +0.5 929,538 + +0.5 929,548 - -0.4 929,584 + -2.3 929,584 + -0.1 929,584 + -2.8 929,585 - -1.5 929,725 + AMB_RS04430 0.37 -1.1 929,725 + AMB_RS04430 0.37 -2.1 929,725 + AMB_RS04430 0.37 -1.1 929,725 + AMB_RS04430 0.37 -0.5 929,725 + AMB_RS04430 0.37 -1.5 929,725 + AMB_RS04430 0.37 -0.0 929,725 + AMB_RS04430 0.37 +0.3 929,725 + AMB_RS04430 0.37 +0.5 929,725 + AMB_RS04430 0.37 -0.5 929,725 + AMB_RS04430 0.37 -0.5 929,725 + AMB_RS04430 0.37 -2.3 929,726 - AMB_RS04430 0.38 +0.5 929,726 - AMB_RS04430 0.38 -2.5 929,726 - AMB_RS04430 0.38 -0.3 929,726 - AMB_RS04430 0.38 +0.0 929,726 - AMB_RS04430 0.38 -2.8 929,726 - AMB_RS04430 0.38 +0.5 929,726 - AMB_RS04430 0.38 -0.5 929,726 - AMB_RS04430 0.38 -0.4 929,726 - AMB_RS04430 0.38 -0.5 929,726 - AMB_RS04430 0.38 -0.0 929,726 - AMB_RS04430 0.38 +0.5 929,726 - AMB_RS04430 0.38 -0.2 929,881 + AMB_RS04430 0.73 -1.1 929,881 + AMB_RS04430 0.73 -1.1 929,881 + AMB_RS04430 0.73 +0.5 929,882 - AMB_RS04430 0.73 -1.1 929,894 - AMB_RS04430 0.75 -2.7 929,956 + AMB_RS04430 0.89 +0.5 929,956 + AMB_RS04430 0.89 -2.6 929,956 + AMB_RS04430 0.89 -2.5 929,956 + AMB_RS04430 0.89 -1.1 929,956 + AMB_RS04430 0.89 -0.5 929,956 + AMB_RS04430 0.89 +0.5 929,957 - AMB_RS04430 0.90 +0.5 929,957 - AMB_RS04430 0.90 -2.7 929,957 - AMB_RS04430 0.90 -1.1 929,957 - AMB_RS04430 0.90 -0.5 929,957 - AMB_RS04430 0.90 -0.8 929,957 - AMB_RS04430 0.90 -0.5 929,957 - AMB_RS04430 0.90 -1.5 929,957 - AMB_RS04430 0.90 -2.5 929,957 - AMB_RS04430 0.90 -0.5 929,957 - AMB_RS04430 0.90 -1.1 929,957 - AMB_RS04430 0.90 +0.5 929,957 - AMB_RS04430 0.90 -1.5 929,957 - AMB_RS04430 0.90 -0.4 930,006 + +0.5 930,007 - -1.5 930,007 - -2.2 930,117 + +0.5 930,137 + -2.9 930,138 - +0.5 930,138 - -4.1 930,320 + -1.1 930,321 - +0.3 930,507 + AMB_RS04435 0.18 -1.9 930,508 - AMB_RS04435 0.18 +0.5 930,508 - AMB_RS04435 0.18 +0.5
Or see this region's nucleotide sequence