Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04280

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04275 and AMB_RS04280 are separated by 37 nucleotidesAMB_RS04280 and AMB_RS04285 are separated by 130 nucleotidesAMB_RS04285 and AMB_RS04290 overlap by 71 nucleotides AMB_RS04275: AMB_RS04275 - insulinase family protein, at 898,003 to 899,415 _RS04275 AMB_RS04280: AMB_RS04280 - polyhydroxyalkanoate synthesis repressor PhaR, at 899,453 to 900,016 _RS04280 AMB_RS04285: AMB_RS04285 - hypothetical protein, at 900,147 to 900,596 _RS04285 AMB_RS04290: AMB_RS04290 - poly-beta-hydroxybutyrate polymerase, at 900,526 to 901,632 _RS04290 Position (kb) 899 900 901Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 898.963 kb on + strand, within AMB_RS04275at 898.963 kb on + strand, within AMB_RS04275at 899.047 kb on + strand, within AMB_RS04275at 899.059 kb on + strand, within AMB_RS04275at 899.060 kb on - strand, within AMB_RS04275at 899.200 kb on + strand, within AMB_RS04275at 899.201 kb on - strand, within AMB_RS04275at 899.454 kb on + strandat 899.455 kb on - strandat 899.455 kb on - strandat 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.553 kb on + strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.554 kb on - strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.659 kb on + strand, within AMB_RS04280at 899.660 kb on - strand, within AMB_RS04280at 899.660 kb on - strand, within AMB_RS04280at 899.660 kb on - strand, within AMB_RS04280at 899.660 kb on - strand, within AMB_RS04280at 899.660 kb on - strand, within AMB_RS04280at 899.660 kb on - strand, within AMB_RS04280at 899.660 kb on - strand, within AMB_RS04280at 899.661 kb on + strand, within AMB_RS04280at 899.661 kb on + strand, within AMB_RS04280at 899.661 kb on + strand, within AMB_RS04280at 899.662 kb on - strand, within AMB_RS04280at 899.662 kb on - strand, within AMB_RS04280at 899.662 kb on - strand, within AMB_RS04280at 899.662 kb on - strand, within AMB_RS04280at 899.748 kb on + strand, within AMB_RS04280at 899.848 kb on + strand, within AMB_RS04280at 899.929 kb on - strand, within AMB_RS04280at 899.968 kb on - strandat 900.073 kb on + strandat 900.073 kb on + strandat 900.074 kb on - strandat 900.074 kb on - strandat 900.076 kb on + strandat 900.087 kb on + strandat 900.087 kb on + strandat 900.087 kb on + strandat 900.146 kb on + strandat 900.171 kb on + strandat 900.171 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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898,963 + AMB_RS04275 0.68 -1.4
898,963 + AMB_RS04275 0.68 -0.5
899,047 + AMB_RS04275 0.74 -0.2
899,059 + AMB_RS04275 0.75 -1.9
899,060 - AMB_RS04275 0.75 -4.6
899,200 + AMB_RS04275 0.85 -1.9
899,201 - AMB_RS04275 0.85 -0.4
899,454 + -0.5
899,455 - -2.1
899,455 - -1.1
899,553 + AMB_RS04280 0.18 -1.9
899,553 + AMB_RS04280 0.18 +0.5
899,553 + AMB_RS04280 0.18 -0.6
899,553 + AMB_RS04280 0.18 +0.5
899,553 + AMB_RS04280 0.18 -2.1
899,553 + AMB_RS04280 0.18 -0.5
899,553 + AMB_RS04280 0.18 -0.1
899,553 + AMB_RS04280 0.18 -1.7
899,553 + AMB_RS04280 0.18 -0.5
899,553 + AMB_RS04280 0.18 -1.1
899,554 - AMB_RS04280 0.18 -2.4
899,554 - AMB_RS04280 0.18 -0.0
899,554 - AMB_RS04280 0.18 -2.6
899,554 - AMB_RS04280 0.18 +0.2
899,554 - AMB_RS04280 0.18 +0.5
899,554 - AMB_RS04280 0.18 -1.1
899,554 - AMB_RS04280 0.18 -2.4
899,554 - AMB_RS04280 0.18 -2.9
899,554 - AMB_RS04280 0.18 -2.5
899,554 - AMB_RS04280 0.18 +0.2
899,554 - AMB_RS04280 0.18 -0.5
899,554 - AMB_RS04280 0.18 -1.5
899,554 - AMB_RS04280 0.18 -0.5
899,554 - AMB_RS04280 0.18 -0.2
899,554 - AMB_RS04280 0.18 -0.1
899,554 - AMB_RS04280 0.18 -0.5
899,554 - AMB_RS04280 0.18 -1.1
899,659 + AMB_RS04280 0.37 -1.1
899,659 + AMB_RS04280 0.37 -2.1
899,659 + AMB_RS04280 0.37 -0.5
899,659 + AMB_RS04280 0.37 -1.0
899,659 + AMB_RS04280 0.37 -0.3
899,659 + AMB_RS04280 0.37 -0.3
899,659 + AMB_RS04280 0.37 -1.9
899,659 + AMB_RS04280 0.37 -0.5
899,659 + AMB_RS04280 0.37 -1.5
899,659 + AMB_RS04280 0.37 -1.1
899,659 + AMB_RS04280 0.37 +0.5
899,659 + AMB_RS04280 0.37 +0.4
899,659 + AMB_RS04280 0.37 -0.6
899,660 - AMB_RS04280 0.37 -0.2
899,660 - AMB_RS04280 0.37 -0.5
899,660 - AMB_RS04280 0.37 +0.5
899,660 - AMB_RS04280 0.37 -3.4
899,660 - AMB_RS04280 0.37 -0.7
899,660 - AMB_RS04280 0.37 -1.1
899,660 - AMB_RS04280 0.37 -0.5
899,661 + AMB_RS04280 0.37 -1.1
899,661 + AMB_RS04280 0.37 +0.8
899,661 + AMB_RS04280 0.37 -3.4
899,662 - AMB_RS04280 0.37 -0.5
899,662 - AMB_RS04280 0.37 -2.5
899,662 - AMB_RS04280 0.37 -0.5
899,662 - AMB_RS04280 0.37 -1.9
899,748 + AMB_RS04280 0.52 -1.9
899,848 + AMB_RS04280 0.70 -1.5
899,929 - AMB_RS04280 0.84 -0.9
899,968 - -1.9
900,073 + -1.9
900,073 + -0.5
900,074 - +0.5
900,074 - -0.5
900,076 + -1.7
900,087 + -2.5
900,087 + -1.7
900,087 + -1.5
900,146 + -0.1
900,171 + -0.4
900,171 + -3.4

Or see this region's nucleotide sequence