Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04030

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04020 and AMB_RS04025 are separated by 120 nucleotidesAMB_RS04025 and AMB_RS04030 are separated by 2 nucleotidesAMB_RS04030 and AMB_RS04035 overlap by 4 nucleotidesAMB_RS04035 and AMB_RS04040 are separated by 1 nucleotides AMB_RS04020: AMB_RS04020 - hypothetical protein, at 842,989 to 843,423 _RS04020 AMB_RS04025: AMB_RS04025 - glutathione S-transferase, at 843,544 to 844,149 _RS04025 AMB_RS04030: AMB_RS04030 - cupin, at 844,152 to 844,577 _RS04030 AMB_RS04035: AMB_RS04035 - hypothetical protein, at 844,574 to 845,050 _RS04035 AMB_RS04040: AMB_RS04040 - phosphatase, at 845,052 to 845,717 _RS04040 Position (kb) 844 845Strain fitness (log2 ratio) -3 -2 -1 0 1at 843.215 kb on + strand, within AMB_RS04020at 843.215 kb on + strand, within AMB_RS04020at 843.215 kb on + strand, within AMB_RS04020at 843.215 kb on + strand, within AMB_RS04020at 843.215 kb on + strand, within AMB_RS04020at 843.215 kb on + strand, within AMB_RS04020at 843.215 kb on + strand, within AMB_RS04020at 843.215 kb on + strand, within AMB_RS04020at 843.216 kb on - strand, within AMB_RS04020at 843.216 kb on - strand, within AMB_RS04020at 843.216 kb on - strand, within AMB_RS04020at 843.216 kb on - strand, within AMB_RS04020at 843.216 kb on - strand, within AMB_RS04020at 843.216 kb on - strand, within AMB_RS04020at 843.216 kb on - strand, within AMB_RS04020at 843.216 kb on - strand, within AMB_RS04020at 843.418 kb on + strandat 843.419 kb on - strandat 843.419 kb on - strandat 843.465 kb on + strandat 843.465 kb on + strandat 843.465 kb on + strandat 843.465 kb on + strandat 843.465 kb on + strandat 843.465 kb on + strandat 843.465 kb on + strandat 843.465 kb on + strandat 843.466 kb on - strandat 843.466 kb on - strandat 843.466 kb on - strandat 843.466 kb on - strandat 843.466 kb on - strandat 843.556 kb on + strandat 843.557 kb on - strandat 843.575 kb on - strandat 843.575 kb on - strandat 843.755 kb on - strand, within AMB_RS04025at 844.033 kb on + strand, within AMB_RS04025at 844.033 kb on + strand, within AMB_RS04025at 844.033 kb on + strand, within AMB_RS04025at 844.034 kb on - strand, within AMB_RS04025at 844.034 kb on - strand, within AMB_RS04025at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.278 kb on + strand, within AMB_RS04030at 844.278 kb on + strand, within AMB_RS04030at 844.279 kb on - strand, within AMB_RS04030at 844.333 kb on + strand, within AMB_RS04030at 844.333 kb on + strand, within AMB_RS04030at 844.333 kb on + strand, within AMB_RS04030at 844.333 kb on + strand, within AMB_RS04030at 844.341 kb on + strand, within AMB_RS04030at 844.341 kb on + strand, within AMB_RS04030at 844.342 kb on - strand, within AMB_RS04030at 844.342 kb on - strand, within AMB_RS04030at 844.342 kb on - strand, within AMB_RS04030at 844.342 kb on - strand, within AMB_RS04030at 844.979 kb on + strand, within AMB_RS04035at 844.979 kb on + strand, within AMB_RS04035at 844.979 kb on + strand, within AMB_RS04035at 844.980 kb on - strand, within AMB_RS04035at 845.124 kb on + strand, within AMB_RS04040at 845.125 kb on - strand, within AMB_RS04040at 845.292 kb on + strand, within AMB_RS04040at 845.293 kb on - strand, within AMB_RS04040at 845.293 kb on - strand, within AMB_RS04040at 845.293 kb on - strand, within AMB_RS04040at 845.293 kb on - strand, within AMB_RS04040at 845.502 kb on + strand, within AMB_RS04040

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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843,215 + AMB_RS04020 0.52 -1.2
843,215 + AMB_RS04020 0.52 -1.9
843,215 + AMB_RS04020 0.52 -2.7
843,215 + AMB_RS04020 0.52 -1.9
843,215 + AMB_RS04020 0.52 +0.4
843,215 + AMB_RS04020 0.52 -0.6
843,215 + AMB_RS04020 0.52 -1.6
843,215 + AMB_RS04020 0.52 +0.4
843,216 - AMB_RS04020 0.52 -2.7
843,216 - AMB_RS04020 0.52 -0.7
843,216 - AMB_RS04020 0.52 -2.4
843,216 - AMB_RS04020 0.52 -0.6
843,216 - AMB_RS04020 0.52 -0.6
843,216 - AMB_RS04020 0.52 +0.4
843,216 - AMB_RS04020 0.52 -0.2
843,216 - AMB_RS04020 0.52 +0.4
843,418 + -0.6
843,419 - +0.4
843,419 - -3.0
843,465 + -0.4
843,465 + -3.2
843,465 + -1.2
843,465 + -1.2
843,465 + -3.4
843,465 + -0.5
843,465 + -0.6
843,465 + +0.4
843,466 - -3.0
843,466 - -2.4
843,466 - -0.6
843,466 - -0.2
843,466 - -3.3
843,556 + -3.2
843,557 - -2.5
843,575 - +0.4
843,575 - -1.9
843,755 - AMB_RS04025 0.35 -2.2
844,033 + AMB_RS04025 0.81 -0.6
844,033 + AMB_RS04025 0.81 -0.6
844,033 + AMB_RS04025 0.81 +0.4
844,034 - AMB_RS04025 0.81 +0.4
844,034 - AMB_RS04025 0.81 +0.4
844,275 + AMB_RS04030 0.29 -0.3
844,275 + AMB_RS04030 0.29 +0.4
844,275 + AMB_RS04030 0.29 +0.2
844,275 + AMB_RS04030 0.29 -0.1
844,275 + AMB_RS04030 0.29 -2.4
844,275 + AMB_RS04030 0.29 +0.4
844,275 + AMB_RS04030 0.29 +0.4
844,276 - AMB_RS04030 0.29 -0.3
844,276 - AMB_RS04030 0.29 -2.6
844,276 - AMB_RS04030 0.29 -1.2
844,276 - AMB_RS04030 0.29 -1.2
844,276 - AMB_RS04030 0.29 -0.6
844,276 - AMB_RS04030 0.29 -0.6
844,276 - AMB_RS04030 0.29 -2.4
844,278 + AMB_RS04030 0.30 -1.6
844,278 + AMB_RS04030 0.30 -0.6
844,279 - AMB_RS04030 0.30 +0.4
844,333 + AMB_RS04030 0.42 -3.3
844,333 + AMB_RS04030 0.42 +0.4
844,333 + AMB_RS04030 0.42 -1.6
844,333 + AMB_RS04030 0.42 -1.6
844,341 + AMB_RS04030 0.44 -1.2
844,341 + AMB_RS04030 0.44 -0.3
844,342 - AMB_RS04030 0.45 +0.4
844,342 - AMB_RS04030 0.45 -0.6
844,342 - AMB_RS04030 0.45 -1.2
844,342 - AMB_RS04030 0.45 -1.2
844,979 + AMB_RS04035 0.85 -1.2
844,979 + AMB_RS04035 0.85 -1.2
844,979 + AMB_RS04035 0.85 -2.6
844,980 - AMB_RS04035 0.85 -3.1
845,124 + AMB_RS04040 0.11 -2.2
845,125 - AMB_RS04040 0.11 +0.4
845,292 + AMB_RS04040 0.36 -0.6
845,293 - AMB_RS04040 0.36 +0.4
845,293 - AMB_RS04040 0.36 +0.4
845,293 - AMB_RS04040 0.36 +0.4
845,293 - AMB_RS04040 0.36 +0.4
845,502 + AMB_RS04040 0.68 -0.6

Or see this region's nucleotide sequence