Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03865

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03860 and AMB_RS03865 are separated by 158 nucleotidesAMB_RS03865 and AMB_RS03870 are separated by 118 nucleotidesAMB_RS03870 and AMB_RS03875 overlap by 1 nucleotidesAMB_RS03875 and AMB_RS03880 overlap by 6 nucleotides AMB_RS03860: AMB_RS03860 - NADPH:quinone oxidoreductase family protein, at 812,049 to 813,020 _RS03860 AMB_RS03865: AMB_RS03865 - hypothetical protein, at 813,179 to 814,009 _RS03865 AMB_RS03870: AMB_RS03870 - hypothetical protein, at 814,128 to 814,370 _RS03870 AMB_RS03875: AMB_RS03875 - NUDIX domain-containing protein, at 814,370 to 814,876 _RS03875 AMB_RS03880: AMB_RS03880 - tetratricopeptide repeat-containing protein, at 814,871 to 815,638 _RS03880 Position (kb) 813 814 815Strain fitness (log2 ratio) -3 -2 -1 0 1at 812.240 kb on - strand, within AMB_RS03860at 812.240 kb on - strand, within AMB_RS03860at 812.240 kb on - strand, within AMB_RS03860at 812.242 kb on + strand, within AMB_RS03860at 812.389 kb on + strand, within AMB_RS03860at 812.389 kb on + strand, within AMB_RS03860at 812.390 kb on - strand, within AMB_RS03860at 812.390 kb on - strand, within AMB_RS03860at 812.455 kb on + strand, within AMB_RS03860at 812.455 kb on + strand, within AMB_RS03860at 812.456 kb on - strand, within AMB_RS03860at 812.616 kb on - strand, within AMB_RS03860at 812.616 kb on - strand, within AMB_RS03860at 812.616 kb on - strand, within AMB_RS03860at 812.656 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.875 kb on + strand, within AMB_RS03860at 812.875 kb on + strand, within AMB_RS03860at 812.876 kb on - strand, within AMB_RS03860at 813.121 kb on + strandat 813.121 kb on + strandat 813.122 kb on - strandat 813.122 kb on - strandat 813.122 kb on - strandat 813.122 kb on - strandat 813.122 kb on - strandat 813.122 kb on - strandat 813.122 kb on - strandat 813.177 kb on + strandat 813.178 kb on - strandat 813.375 kb on + strand, within AMB_RS03865at 813.460 kb on - strand, within AMB_RS03865at 813.732 kb on + strand, within AMB_RS03865at 813.732 kb on + strand, within AMB_RS03865at 813.732 kb on + strand, within AMB_RS03865at 813.733 kb on - strand, within AMB_RS03865at 813.997 kb on - strandat 814.000 kb on + strandat 814.000 kb on + strandat 814.003 kb on + strandat 814.089 kb on + strandat 814.089 kb on + strandat 814.090 kb on - strandat 814.090 kb on - strandat 814.090 kb on - strandat 814.090 kb on - strandat 814.090 kb on - strandat 814.350 kb on + strandat 814.350 kb on + strandat 814.351 kb on - strandat 814.351 kb on - strandat 814.351 kb on - strandat 814.351 kb on - strandat 814.351 kb on - strandat 814.458 kb on - strand, within AMB_RS03875at 814.458 kb on - strand, within AMB_RS03875at 814.492 kb on + strand, within AMB_RS03875at 814.492 kb on + strand, within AMB_RS03875at 814.492 kb on + strand, within AMB_RS03875at 814.493 kb on - strand, within AMB_RS03875at 814.508 kb on + strand, within AMB_RS03875at 814.508 kb on + strand, within AMB_RS03875at 814.508 kb on + strand, within AMB_RS03875at 814.509 kb on - strand, within AMB_RS03875at 814.509 kb on - strand, within AMB_RS03875at 814.509 kb on - strand, within AMB_RS03875at 814.568 kb on + strand, within AMB_RS03875at 814.568 kb on + strand, within AMB_RS03875at 814.568 kb on + strand, within AMB_RS03875at 814.569 kb on - strand, within AMB_RS03875at 814.569 kb on - strand, within AMB_RS03875at 814.570 kb on + strand, within AMB_RS03875at 814.570 kb on + strand, within AMB_RS03875at 814.570 kb on + strand, within AMB_RS03875at 814.570 kb on + strand, within AMB_RS03875at 814.570 kb on + strand, within AMB_RS03875at 814.570 kb on + strand, within AMB_RS03875at 814.570 kb on + strand, within AMB_RS03875at 814.570 kb on + strand, within AMB_RS03875at 814.571 kb on - strand, within AMB_RS03875at 814.571 kb on - strand, within AMB_RS03875at 814.571 kb on - strand, within AMB_RS03875at 814.571 kb on - strand, within AMB_RS03875at 814.571 kb on - strand, within AMB_RS03875at 814.662 kb on + strand, within AMB_RS03875at 814.662 kb on + strand, within AMB_RS03875at 814.663 kb on - strand, within AMB_RS03875at 814.663 kb on - strand, within AMB_RS03875at 814.700 kb on + strand, within AMB_RS03875at 814.701 kb on - strand, within AMB_RS03875at 814.799 kb on + strand, within AMB_RS03875at 814.800 kb on - strand, within AMB_RS03875at 814.800 kb on - strand, within AMB_RS03875at 814.826 kb on + strandat 814.826 kb on + strandat 814.826 kb on + strandat 814.826 kb on + strandat 814.873 kb on - strandat 814.873 kb on - strandat 814.873 kb on - strandat 814.874 kb on + strandat 814.874 kb on + strandat 814.875 kb on - strandat 814.875 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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812,240 - AMB_RS03860 0.20 -1.9
812,240 - AMB_RS03860 0.20 -1.6
812,240 - AMB_RS03860 0.20 -2.1
812,242 + AMB_RS03860 0.20 +0.4
812,389 + AMB_RS03860 0.35 +0.4
812,389 + AMB_RS03860 0.35 +0.4
812,390 - AMB_RS03860 0.35 -0.5
812,390 - AMB_RS03860 0.35 -1.6
812,455 + AMB_RS03860 0.42 -0.6
812,455 + AMB_RS03860 0.42 -0.6
812,456 - AMB_RS03860 0.42 -2.4
812,616 - AMB_RS03860 0.58 -0.6
812,616 - AMB_RS03860 0.58 -3.4
812,616 - AMB_RS03860 0.58 -1.6
812,656 + AMB_RS03860 0.62 +0.4
812,710 + AMB_RS03860 0.68 -2.8
812,710 + AMB_RS03860 0.68 +0.4
812,710 + AMB_RS03860 0.68 -3.0
812,710 + AMB_RS03860 0.68 +0.4
812,710 + AMB_RS03860 0.68 +0.4
812,710 + AMB_RS03860 0.68 -2.9
812,710 + AMB_RS03860 0.68 +0.4
812,710 + AMB_RS03860 0.68 -1.9
812,710 + AMB_RS03860 0.68 -1.1
812,710 + AMB_RS03860 0.68 -0.8
812,710 + AMB_RS03860 0.68 -1.6
812,710 + AMB_RS03860 0.68 -0.6
812,711 - AMB_RS03860 0.68 +0.4
812,711 - AMB_RS03860 0.68 +0.4
812,711 - AMB_RS03860 0.68 -0.6
812,711 - AMB_RS03860 0.68 +0.4
812,711 - AMB_RS03860 0.68 -0.2
812,711 - AMB_RS03860 0.68 -2.5
812,711 - AMB_RS03860 0.68 -0.4
812,711 - AMB_RS03860 0.68 -0.2
812,711 - AMB_RS03860 0.68 +0.4
812,875 + AMB_RS03860 0.85 -0.6
812,875 + AMB_RS03860 0.85 +0.4
812,876 - AMB_RS03860 0.85 -3.0
813,121 + -1.1
813,121 + -0.1
813,122 - +0.4
813,122 - -0.6
813,122 - -0.6
813,122 - +0.4
813,122 - +0.4
813,122 - -1.6
813,122 - -1.9
813,177 + -2.4
813,178 - -0.2
813,375 + AMB_RS03865 0.24 -2.6
813,460 - AMB_RS03865 0.34 -0.1
813,732 + AMB_RS03865 0.67 +0.4
813,732 + AMB_RS03865 0.67 -2.6
813,732 + AMB_RS03865 0.67 -1.9
813,733 - AMB_RS03865 0.67 -1.9
813,997 - -2.1
814,000 + -0.6
814,000 + -0.6
814,003 + +0.4
814,089 + -1.9
814,089 + -0.5
814,090 - -2.1
814,090 - -2.4
814,090 - -0.6
814,090 - +0.4
814,090 - -1.9
814,350 + -0.4
814,350 + +0.4
814,351 - -1.6
814,351 - +0.4
814,351 - +0.7
814,351 - -1.9
814,351 - +0.4
814,458 - AMB_RS03875 0.17 -1.9
814,458 - AMB_RS03875 0.17 +0.4
814,492 + AMB_RS03875 0.24 +0.4
814,492 + AMB_RS03875 0.24 +0.4
814,492 + AMB_RS03875 0.24 -0.5
814,493 - AMB_RS03875 0.24 -1.6
814,508 + AMB_RS03875 0.27 -0.1
814,508 + AMB_RS03875 0.27 -1.1
814,508 + AMB_RS03875 0.27 -0.0
814,509 - AMB_RS03875 0.27 +0.4
814,509 - AMB_RS03875 0.27 -1.6
814,509 - AMB_RS03875 0.27 +0.4
814,568 + AMB_RS03875 0.39 -0.6
814,568 + AMB_RS03875 0.39 -1.9
814,568 + AMB_RS03875 0.39 -0.6
814,569 - AMB_RS03875 0.39 -1.6
814,569 - AMB_RS03875 0.39 -2.6
814,570 + AMB_RS03875 0.39 -0.6
814,570 + AMB_RS03875 0.39 +0.5
814,570 + AMB_RS03875 0.39 -1.1
814,570 + AMB_RS03875 0.39 -0.3
814,570 + AMB_RS03875 0.39 +0.4
814,570 + AMB_RS03875 0.39 +0.4
814,570 + AMB_RS03875 0.39 +0.4
814,570 + AMB_RS03875 0.39 -0.6
814,571 - AMB_RS03875 0.40 -1.6
814,571 - AMB_RS03875 0.40 -0.6
814,571 - AMB_RS03875 0.40 -1.6
814,571 - AMB_RS03875 0.40 -1.6
814,571 - AMB_RS03875 0.40 -0.6
814,662 + AMB_RS03875 0.58 -1.9
814,662 + AMB_RS03875 0.58 -0.6
814,663 - AMB_RS03875 0.58 -1.6
814,663 - AMB_RS03875 0.58 -0.6
814,700 + AMB_RS03875 0.65 -0.6
814,701 - AMB_RS03875 0.65 +0.4
814,799 + AMB_RS03875 0.85 +0.4
814,800 - AMB_RS03875 0.85 -1.1
814,800 - AMB_RS03875 0.85 -0.5
814,826 + -0.6
814,826 + -1.9
814,826 + -2.7
814,826 + -1.9
814,873 - -0.1
814,873 - +0.4
814,873 - -1.7
814,874 + -1.6
814,874 + +0.4
814,875 - -1.1
814,875 - +0.4

Or see this region's nucleotide sequence