Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03815 and AMB_RS03820 are separated by 7 nucleotides AMB_RS03820 and AMB_RS03825 overlap by 4 nucleotides AMB_RS03825 and AMB_RS23150 overlap by 4 nucleotides AMB_RS23150 and AMB_RS03835 are separated by 19 nucleotides
AMB_RS03815: AMB_RS03815 - hypothetical protein, at 805,513 to 805,953
_RS03815
AMB_RS03820: AMB_RS03820 - KR domain-containing protein, at 805,961 to 806,722
_RS03820
AMB_RS03825: AMB_RS03825 - DUF86 domain-containing protein, at 806,719 to 807,093
_RS03825
AMB_RS23150: AMB_RS23150 - nucleotidyltransferase, at 807,090 to 807,620
_RS23150
AMB_RS03835: AMB_RS03835 - YicC family protein, at 807,640 to 808,539
_RS03835
Position (kb) 806
807
808 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 805.862 kb on - strand, within AMB_RS03815 at 805.862 kb on - strand, within AMB_RS03815 at 805.862 kb on - strand, within AMB_RS03815 at 805.903 kb on + strand, within AMB_RS03815 at 805.903 kb on + strand, within AMB_RS03815 at 805.904 kb on - strand, within AMB_RS03815 at 805.904 kb on - strand, within AMB_RS03815 at 805.904 kb on - strand, within AMB_RS03815 at 805.904 kb on - strand, within AMB_RS03815 at 805.919 kb on + strand at 805.920 kb on - strand at 805.920 kb on - strand at 805.951 kb on + strand at 805.962 kb on + strand at 805.962 kb on + strand at 805.963 kb on - strand at 805.963 kb on - strand at 805.963 kb on - strand at 806.846 kb on + strand, within AMB_RS03825 at 806.846 kb on + strand, within AMB_RS03825 at 806.847 kb on - strand, within AMB_RS03825 at 807.024 kb on + strand, within AMB_RS03825 at 807.024 kb on + strand, within AMB_RS03825 at 807.027 kb on - strand, within AMB_RS03825 at 807.115 kb on + strand at 807.116 kb on - strand at 807.232 kb on + strand, within AMB_RS23150 at 807.232 kb on + strand, within AMB_RS23150 at 807.232 kb on + strand, within AMB_RS23150 at 807.233 kb on - strand, within AMB_RS23150 at 807.233 kb on - strand, within AMB_RS23150 at 807.331 kb on + strand, within AMB_RS23150 at 807.331 kb on + strand, within AMB_RS23150 at 807.332 kb on - strand, within AMB_RS23150 at 807.332 kb on - strand, within AMB_RS23150 at 807.547 kb on + strand, within AMB_RS23150 at 807.548 kb on - strand, within AMB_RS23150 at 807.548 kb on - strand, within AMB_RS23150 at 807.602 kb on + strand at 807.602 kb on + strand at 807.604 kb on + strand at 807.604 kb on + strand at 807.604 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 805,862 - AMB_RS03815 0.79 -2.9 805,862 - AMB_RS03815 0.79 +0.4 805,862 - AMB_RS03815 0.79 -0.6 805,903 + AMB_RS03815 0.88 -0.4 805,903 + AMB_RS03815 0.88 -1.6 805,904 - AMB_RS03815 0.89 -4.0 805,904 - AMB_RS03815 0.89 -0.2 805,904 - AMB_RS03815 0.89 -1.6 805,904 - AMB_RS03815 0.89 -1.9 805,919 + +0.4 805,920 - -1.2 805,920 - -1.2 805,951 + -2.5 805,962 + +0.4 805,962 + -2.2 805,963 - +0.4 805,963 - +0.4 805,963 - -0.5 806,846 + AMB_RS03825 0.34 -2.4 806,846 + AMB_RS03825 0.34 -3.7 806,847 - AMB_RS03825 0.34 +0.4 807,024 + AMB_RS03825 0.81 -0.6 807,024 + AMB_RS03825 0.81 -0.6 807,027 - AMB_RS03825 0.82 -1.9 807,115 + -1.2 807,116 - +0.4 807,232 + AMB_RS23150 0.27 -1.1 807,232 + AMB_RS23150 0.27 -1.1 807,232 + AMB_RS23150 0.27 -0.4 807,233 - AMB_RS23150 0.27 -2.1 807,233 - AMB_RS23150 0.27 -3.0 807,331 + AMB_RS23150 0.45 -1.1 807,331 + AMB_RS23150 0.45 -1.6 807,332 - AMB_RS23150 0.46 +0.4 807,332 - AMB_RS23150 0.46 -0.2 807,547 + AMB_RS23150 0.86 -3.4 807,548 - AMB_RS23150 0.86 -3.7 807,548 - AMB_RS23150 0.86 -1.9 807,602 + +0.4 807,602 + +0.4 807,604 + -0.6 807,604 + -0.6 807,604 + -1.1
Or see this region's nucleotide sequence