Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03695 and AMB_RS03700 are separated by 230 nucleotides AMB_RS03700 and AMB_RS03705 are separated by 93 nucleotides AMB_RS03705 and AMB_RS03710 overlap by 4 nucleotides
AMB_RS03695: AMB_RS03695 - NADP-dependent malic enzyme, at 779,375 to 781,657
_RS03695
AMB_RS03700: AMB_RS03700 - tRNA-Leu, at 781,888 to 781,974
_RS03700
AMB_RS03705: AMB_RS03705 - lipoate-protein ligase B, at 782,068 to 782,706
_RS03705
AMB_RS03710: AMB_RS03710 - acyl-CoA transferase/carnitine dehydratase, at 782,703 to 784,160
_RS03710
Position (kb) 782
783 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 781.542 kb on + strand at 781.542 kb on + strand at 781.542 kb on + strand at 781.543 kb on - strand at 781.543 kb on - strand at 781.601 kb on - strand at 781.624 kb on - strand at 781.624 kb on - strand at 781.684 kb on + strand at 781.685 kb on - strand at 781.690 kb on + strand at 781.690 kb on + strand at 781.691 kb on - strand at 781.691 kb on - strand at 781.715 kb on + strand at 781.715 kb on + strand at 781.716 kb on - strand at 781.821 kb on - strand at 782.704 kb on + strand at 782.812 kb on + strand at 782.813 kb on - strand at 782.998 kb on + strand, within AMB_RS03710 at 782.999 kb on - strand, within AMB_RS03710 at 782.999 kb on - strand, within AMB_RS03710 at 783.046 kb on + strand, within AMB_RS03710 at 783.047 kb on - strand, within AMB_RS03710 at 783.047 kb on - strand, within AMB_RS03710 at 783.071 kb on - strand, within AMB_RS03710 at 783.071 kb on - strand, within AMB_RS03710 at 783.071 kb on - strand, within AMB_RS03710 at 783.071 kb on - strand, within AMB_RS03710 at 783.286 kb on + strand, within AMB_RS03710 at 783.287 kb on - strand, within AMB_RS03710
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 781,542 + -1.6 781,542 + -1.1 781,542 + -2.1 781,543 - +0.4 781,543 - -0.3 781,601 - -2.1 781,624 - -0.6 781,624 - -0.3 781,684 + +0.4 781,685 - -0.3 781,690 + +0.4 781,690 + +0.4 781,691 - -2.6 781,691 - -0.6 781,715 + -1.9 781,715 + -1.9 781,716 - -0.6 781,821 - -3.1 782,704 + -2.7 782,812 + -0.6 782,813 - -0.4 782,998 + AMB_RS03710 0.20 +0.4 782,999 - AMB_RS03710 0.20 +0.4 782,999 - AMB_RS03710 0.20 -1.1 783,046 + AMB_RS03710 0.24 -0.1 783,047 - AMB_RS03710 0.24 -1.6 783,047 - AMB_RS03710 0.24 +0.4 783,071 - AMB_RS03710 0.25 -1.1 783,071 - AMB_RS03710 0.25 -0.9 783,071 - AMB_RS03710 0.25 -0.2 783,071 - AMB_RS03710 0.25 -2.1 783,286 + AMB_RS03710 0.40 -0.0 783,287 - AMB_RS03710 0.40 -0.6
Or see this region's nucleotide sequence