Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03660 and AMB_RS03665 overlap by 4 nucleotides AMB_RS03665 and AMB_RS03670 are separated by 59 nucleotides AMB_RS03670 and AMB_RS03675 overlap by 17 nucleotides
AMB_RS03660: AMB_RS03660 - pseudaminic acid synthase, at 772,835 to 773,881
_RS03660
AMB_RS03665: AMB_RS03665 - UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase, at 773,878 to 774,852
_RS03665
AMB_RS03670: AMB_RS03670 - N-acetyltransferase, at 774,912 to 775,385
_RS03670
AMB_RS03675: AMB_RS03675 - UDP-N-acetylglucosamine 4,6-dehydratase (inverting), at 775,369 to 776,451
_RS03675
Position (kb) 773
774
775 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 772.933 kb on - strand at 773.001 kb on + strand, within AMB_RS03660 at 773.001 kb on + strand, within AMB_RS03660 at 773.001 kb on + strand, within AMB_RS03660 at 773.001 kb on + strand, within AMB_RS03660 at 773.001 kb on + strand, within AMB_RS03660 at 773.001 kb on + strand, within AMB_RS03660 at 773.001 kb on + strand, within AMB_RS03660 at 773.001 kb on + strand, within AMB_RS03660 at 773.001 kb on + strand, within AMB_RS03660 at 773.002 kb on - strand, within AMB_RS03660 at 773.002 kb on - strand, within AMB_RS03660 at 773.002 kb on - strand, within AMB_RS03660 at 773.002 kb on - strand, within AMB_RS03660 at 773.002 kb on - strand, within AMB_RS03660 at 773.002 kb on - strand, within AMB_RS03660 at 773.002 kb on - strand, within AMB_RS03660 at 773.052 kb on + strand, within AMB_RS03660 at 773.052 kb on + strand, within AMB_RS03660 at 773.052 kb on + strand, within AMB_RS03660 at 773.052 kb on + strand, within AMB_RS03660 at 773.053 kb on - strand, within AMB_RS03660 at 773.053 kb on - strand, within AMB_RS03660 at 773.053 kb on - strand, within AMB_RS03660 at 773.631 kb on + strand, within AMB_RS03660 at 773.631 kb on + strand, within AMB_RS03660 at 773.631 kb on + strand, within AMB_RS03660 at 773.640 kb on + strand, within AMB_RS03660 at 773.640 kb on + strand, within AMB_RS03660 at 773.640 kb on + strand, within AMB_RS03660 at 773.640 kb on + strand, within AMB_RS03660 at 773.640 kb on + strand, within AMB_RS03660 at 773.640 kb on + strand, within AMB_RS03660 at 773.640 kb on + strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.641 kb on - strand, within AMB_RS03660 at 773.704 kb on + strand, within AMB_RS03660 at 773.704 kb on + strand, within AMB_RS03660 at 773.705 kb on - strand, within AMB_RS03660 at 773.705 kb on - strand, within AMB_RS03660 at 773.705 kb on - strand, within AMB_RS03660 at 773.705 kb on - strand, within AMB_RS03660 at 773.705 kb on - strand, within AMB_RS03660 at 774.868 kb on + strand at 774.868 kb on + strand at 774.869 kb on - strand at 774.887 kb on - strand at 774.887 kb on - strand at 774.889 kb on - strand at 774.889 kb on - strand at 775.439 kb on - strand at 775.439 kb on - strand at 775.441 kb on + strand at 775.441 kb on + strand at 775.441 kb on + strand at 775.442 kb on - strand at 775.442 kb on - strand at 775.442 kb on - strand at 775.442 kb on - strand at 775.442 kb on - strand at 775.537 kb on + strand, within AMB_RS03675 at 775.537 kb on + strand, within AMB_RS03675 at 775.537 kb on + strand, within AMB_RS03675 at 775.537 kb on + strand, within AMB_RS03675 at 775.537 kb on + strand, within AMB_RS03675 at 775.538 kb on - strand, within AMB_RS03675 at 775.538 kb on - strand, within AMB_RS03675 at 775.538 kb on - strand, within AMB_RS03675 at 775.538 kb on - strand, within AMB_RS03675 at 775.633 kb on + strand, within AMB_RS03675 at 775.634 kb on - strand, within AMB_RS03675 at 775.634 kb on - strand, within AMB_RS03675 at 775.634 kb on - strand, within AMB_RS03675 at 775.634 kb on - strand, within AMB_RS03675 at 775.738 kb on + strand, within AMB_RS03675 at 775.738 kb on + strand, within AMB_RS03675 at 775.738 kb on + strand, within AMB_RS03675 at 775.738 kb on + strand, within AMB_RS03675 at 775.738 kb on + strand, within AMB_RS03675 at 775.738 kb on + strand, within AMB_RS03675 at 775.738 kb on + strand, within AMB_RS03675 at 775.739 kb on - strand, within AMB_RS03675 at 775.739 kb on - strand, within AMB_RS03675 at 775.739 kb on - strand, within AMB_RS03675 at 775.739 kb on - strand, within AMB_RS03675 at 775.767 kb on + strand, within AMB_RS03675 at 775.767 kb on + strand, within AMB_RS03675
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 772,933 - +0.4 773,001 + AMB_RS03660 0.16 -1.9 773,001 + AMB_RS03660 0.16 +0.4 773,001 + AMB_RS03660 0.16 +0.4 773,001 + AMB_RS03660 0.16 -2.6 773,001 + AMB_RS03660 0.16 -0.5 773,001 + AMB_RS03660 0.16 -0.3 773,001 + AMB_RS03660 0.16 -1.1 773,001 + AMB_RS03660 0.16 +0.4 773,001 + AMB_RS03660 0.16 -0.4 773,002 - AMB_RS03660 0.16 -3.6 773,002 - AMB_RS03660 0.16 +0.4 773,002 - AMB_RS03660 0.16 -1.4 773,002 - AMB_RS03660 0.16 -2.7 773,002 - AMB_RS03660 0.16 -0.1 773,002 - AMB_RS03660 0.16 -0.6 773,002 - AMB_RS03660 0.16 -0.6 773,052 + AMB_RS03660 0.21 +0.4 773,052 + AMB_RS03660 0.21 -1.8 773,052 + AMB_RS03660 0.21 -1.6 773,052 + AMB_RS03660 0.21 -1.6 773,053 - AMB_RS03660 0.21 -1.1 773,053 - AMB_RS03660 0.21 -1.7 773,053 - AMB_RS03660 0.21 -0.6 773,631 + AMB_RS03660 0.76 -3.0 773,631 + AMB_RS03660 0.76 -2.4 773,631 + AMB_RS03660 0.76 -2.4 773,640 + AMB_RS03660 0.77 -0.4 773,640 + AMB_RS03660 0.77 -0.5 773,640 + AMB_RS03660 0.77 +0.4 773,640 + AMB_RS03660 0.77 -2.1 773,640 + AMB_RS03660 0.77 +0.4 773,640 + AMB_RS03660 0.77 +0.4 773,640 + AMB_RS03660 0.77 +0.4 773,641 - AMB_RS03660 0.77 -1.1 773,641 - AMB_RS03660 0.77 -1.1 773,641 - AMB_RS03660 0.77 -1.9 773,641 - AMB_RS03660 0.77 -0.1 773,641 - AMB_RS03660 0.77 -1.6 773,641 - AMB_RS03660 0.77 -0.6 773,641 - AMB_RS03660 0.77 -1.1 773,641 - AMB_RS03660 0.77 +0.4 773,641 - AMB_RS03660 0.77 -0.1 773,641 - AMB_RS03660 0.77 -0.8 773,704 + AMB_RS03660 0.83 -1.6 773,704 + AMB_RS03660 0.83 -2.2 773,705 - AMB_RS03660 0.83 +0.4 773,705 - AMB_RS03660 0.83 -2.1 773,705 - AMB_RS03660 0.83 -0.8 773,705 - AMB_RS03660 0.83 +0.4 773,705 - AMB_RS03660 0.83 -0.6 774,868 + -2.1 774,868 + -2.9 774,869 - +0.4 774,887 - -1.6 774,887 - -0.1 774,889 - -2.7 774,889 - +0.4 775,439 - -2.5 775,439 - -2.4 775,441 + -0.2 775,441 + -1.0 775,441 + -2.6 775,442 - -1.1 775,442 - -0.5 775,442 - -1.1 775,442 - +0.4 775,442 - -2.1 775,537 + AMB_RS03675 0.16 -0.4 775,537 + AMB_RS03675 0.16 +0.4 775,537 + AMB_RS03675 0.16 -0.7 775,537 + AMB_RS03675 0.16 -0.3 775,537 + AMB_RS03675 0.16 -0.6 775,538 - AMB_RS03675 0.16 -0.8 775,538 - AMB_RS03675 0.16 -0.5 775,538 - AMB_RS03675 0.16 +0.4 775,538 - AMB_RS03675 0.16 -0.4 775,633 + AMB_RS03675 0.24 -1.4 775,634 - AMB_RS03675 0.24 -3.3 775,634 - AMB_RS03675 0.24 +0.4 775,634 - AMB_RS03675 0.24 +0.4 775,634 - AMB_RS03675 0.24 -2.1 775,738 + AMB_RS03675 0.34 +0.4 775,738 + AMB_RS03675 0.34 +0.4 775,738 + AMB_RS03675 0.34 -1.1 775,738 + AMB_RS03675 0.34 +0.4 775,738 + AMB_RS03675 0.34 -0.6 775,738 + AMB_RS03675 0.34 +0.4 775,738 + AMB_RS03675 0.34 -1.1 775,739 - AMB_RS03675 0.34 -1.6 775,739 - AMB_RS03675 0.34 -0.1 775,739 - AMB_RS03675 0.34 +0.4 775,739 - AMB_RS03675 0.34 -0.3 775,767 + AMB_RS03675 0.37 -0.6 775,767 + AMB_RS03675 0.37 -2.9
Or see this region's nucleotide sequence