Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03450

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03440 and AMB_RS03445 are separated by 140 nucleotidesAMB_RS03445 and AMB_RS03450 overlap by 31 nucleotidesAMB_RS03450 and AMB_RS03455 are separated by 203 nucleotidesAMB_RS03455 and AMB_RS03460 are separated by 86 nucleotides AMB_RS03440: AMB_RS03440 - hypothetical protein, at 719,970 to 720,536 _RS03440 AMB_RS03445: AMB_RS03445 - hypothetical protein, at 720,677 to 720,904 _RS03445 AMB_RS03450: AMB_RS03450 - DUF4239 domain-containing protein, at 720,874 to 721,680 _RS03450 AMB_RS03455: AMB_RS03455 - hypothetical protein, at 721,884 to 722,300 _RS03455 AMB_RS03460: AMB_RS03460 - hydroxymethylglutaryl-CoA lyase, at 722,387 to 723,280 _RS03460 Position (kb) 720 721 722Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 720.514 kb on - strandat 720.514 kb on - strandat 720.544 kb on + strandat 720.597 kb on + strandat 720.597 kb on + strandat 720.599 kb on + strandat 720.599 kb on + strandat 720.599 kb on + strandat 720.599 kb on + strandat 720.599 kb on + strandat 720.599 kb on + strandat 721.156 kb on + strand, within AMB_RS03450at 721.156 kb on + strand, within AMB_RS03450at 721.343 kb on + strand, within AMB_RS03450at 721.344 kb on - strand, within AMB_RS03450at 721.344 kb on - strand, within AMB_RS03450at 721.436 kb on + strand, within AMB_RS03450at 721.436 kb on + strand, within AMB_RS03450at 721.582 kb on + strand, within AMB_RS03450at 721.582 kb on + strand, within AMB_RS03450at 721.582 kb on + strand, within AMB_RS03450at 721.582 kb on + strand, within AMB_RS03450at 721.582 kb on + strand, within AMB_RS03450at 721.582 kb on + strand, within AMB_RS03450at 721.583 kb on - strand, within AMB_RS03450at 721.583 kb on - strand, within AMB_RS03450at 721.649 kb on + strandat 721.649 kb on + strandat 721.649 kb on + strandat 721.650 kb on - strandat 721.650 kb on - strandat 721.650 kb on - strandat 721.658 kb on + strandat 721.658 kb on + strandat 721.658 kb on + strandat 721.658 kb on + strandat 721.658 kb on + strandat 721.658 kb on + strandat 721.658 kb on + strandat 721.659 kb on - strandat 721.659 kb on - strandat 721.659 kb on - strandat 721.659 kb on - strandat 721.659 kb on - strandat 721.659 kb on - strandat 721.659 kb on - strandat 721.680 kb on + strandat 721.681 kb on - strandat 721.706 kb on + strandat 721.706 kb on + strandat 721.707 kb on - strandat 721.742 kb on - strandat 721.839 kb on + strandat 721.839 kb on + strandat 721.845 kb on + strandat 721.865 kb on + strandat 721.865 kb on + strandat 721.866 kb on - strandat 721.948 kb on + strand, within AMB_RS03455at 721.948 kb on + strand, within AMB_RS03455at 721.949 kb on - strand, within AMB_RS03455at 722.092 kb on + strand, within AMB_RS03455at 722.099 kb on + strand, within AMB_RS03455at 722.099 kb on + strand, within AMB_RS03455at 722.099 kb on + strand, within AMB_RS03455at 722.099 kb on + strand, within AMB_RS03455at 722.100 kb on - strand, within AMB_RS03455at 722.100 kb on - strand, within AMB_RS03455at 722.100 kb on - strand, within AMB_RS03455at 722.100 kb on - strand, within AMB_RS03455at 722.100 kb on - strand, within AMB_RS03455at 722.100 kb on - strand, within AMB_RS03455at 722.354 kb on - strandat 722.356 kb on - strandat 722.356 kb on - strandat 722.356 kb on - strandat 722.388 kb on + strandat 722.388 kb on + strandat 722.388 kb on + strandat 722.389 kb on - strandat 722.389 kb on - strandat 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.556 kb on + strand, within AMB_RS03460at 722.556 kb on + strand, within AMB_RS03460at 722.556 kb on + strand, within AMB_RS03460at 722.556 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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720,514 - -2.7
720,514 - -0.6
720,544 + -0.6
720,597 + -0.6
720,597 + +0.4
720,599 + -0.3
720,599 + +0.4
720,599 + -2.4
720,599 + -2.4
720,599 + -0.9
720,599 + -1.6
721,156 + AMB_RS03450 0.35 -1.1
721,156 + AMB_RS03450 0.35 -2.6
721,343 + AMB_RS03450 0.58 -0.6
721,344 - AMB_RS03450 0.58 -1.9
721,344 - AMB_RS03450 0.58 -0.6
721,436 + AMB_RS03450 0.70 -2.4
721,436 + AMB_RS03450 0.70 +0.4
721,582 + AMB_RS03450 0.88 -1.9
721,582 + AMB_RS03450 0.88 -0.6
721,582 + AMB_RS03450 0.88 -1.9
721,582 + AMB_RS03450 0.88 -1.6
721,582 + AMB_RS03450 0.88 -0.6
721,582 + AMB_RS03450 0.88 -1.1
721,583 - AMB_RS03450 0.88 -3.1
721,583 - AMB_RS03450 0.88 -0.5
721,649 + -0.6
721,649 + +0.4
721,649 + -0.0
721,650 - -0.6
721,650 - +1.4
721,650 - -1.1
721,658 + +0.4
721,658 + -2.6
721,658 + -0.6
721,658 + -1.1
721,658 + -1.1
721,658 + +0.4
721,658 + -0.9
721,659 - +0.4
721,659 - +0.4
721,659 - -1.6
721,659 - -0.6
721,659 - -2.4
721,659 - -0.9
721,659 - -2.1
721,680 + +0.4
721,681 - +0.4
721,706 + -3.4
721,706 + -0.0
721,707 - +2.0
721,742 - -2.1
721,839 + +0.4
721,839 + +0.4
721,845 + +1.4
721,865 + +0.4
721,865 + -1.1
721,866 - -0.1
721,948 + AMB_RS03455 0.15 -0.6
721,948 + AMB_RS03455 0.15 -1.6
721,949 - AMB_RS03455 0.16 -2.7
722,092 + AMB_RS03455 0.50 -0.6
722,099 + AMB_RS03455 0.52 -2.1
722,099 + AMB_RS03455 0.52 -2.4
722,099 + AMB_RS03455 0.52 -0.6
722,099 + AMB_RS03455 0.52 -2.9
722,100 - AMB_RS03455 0.52 -2.9
722,100 - AMB_RS03455 0.52 -0.6
722,100 - AMB_RS03455 0.52 -0.8
722,100 - AMB_RS03455 0.52 -1.9
722,100 - AMB_RS03455 0.52 -1.6
722,100 - AMB_RS03455 0.52 -2.6
722,354 - +0.4
722,356 - -1.6
722,356 - -1.6
722,356 - -1.1
722,388 + -3.5
722,388 + +0.4
722,388 + -0.6
722,389 - -0.6
722,389 - -0.0
722,511 + AMB_RS03460 0.14 -0.9
722,511 + AMB_RS03460 0.14 -2.7
722,511 + AMB_RS03460 0.14 -0.5
722,511 + AMB_RS03460 0.14 +0.5
722,511 + AMB_RS03460 0.14 -2.5
722,511 + AMB_RS03460 0.14 +0.5
722,511 + AMB_RS03460 0.14 -0.5
722,511 + AMB_RS03460 0.14 -0.8
722,512 - AMB_RS03460 0.14 +0.5
722,512 - AMB_RS03460 0.14 -1.5
722,512 - AMB_RS03460 0.14 -0.5
722,512 - AMB_RS03460 0.14 -1.1
722,512 - AMB_RS03460 0.14 -1.1
722,512 - AMB_RS03460 0.14 -0.1
722,512 - AMB_RS03460 0.14 +0.1
722,512 - AMB_RS03460 0.14 -1.9
722,512 - AMB_RS03460 0.14 -0.5
722,512 - AMB_RS03460 0.14 -0.5
722,556 + AMB_RS03460 0.19 -3.0
722,556 + AMB_RS03460 0.19 +0.5
722,556 + AMB_RS03460 0.19 -2.7
722,556 + AMB_RS03460 0.19 -1.9
722,646 + AMB_RS03460 0.29 -0.5
722,646 + AMB_RS03460 0.29 -0.4
722,646 + AMB_RS03460 0.29 -0.5
722,646 + AMB_RS03460 0.29 +0.5
722,646 + AMB_RS03460 0.29 -1.2
722,646 + AMB_RS03460 0.29 +0.1
722,646 + AMB_RS03460 0.29 -0.5
722,646 + AMB_RS03460 0.29 -2.4
722,647 - AMB_RS03460 0.29 -0.3
722,647 - AMB_RS03460 0.29 -1.1
722,647 - AMB_RS03460 0.29 -0.1
722,647 - AMB_RS03460 0.29 -1.5
722,647 - AMB_RS03460 0.29 -0.5
722,647 - AMB_RS03460 0.29 +0.2
722,647 - AMB_RS03460 0.29 -0.5
722,647 - AMB_RS03460 0.29 +0.5
722,647 - AMB_RS03460 0.29 -0.5
722,647 - AMB_RS03460 0.29 -2.5
722,647 - AMB_RS03460 0.29 -1.5
722,647 - AMB_RS03460 0.29 -0.5
722,647 - AMB_RS03460 0.29 -1.0
722,647 - AMB_RS03460 0.29 -2.1
722,647 - AMB_RS03460 0.29 -1.1
722,647 - AMB_RS03460 0.29 -1.9
722,647 - AMB_RS03460 0.29 -1.5

Or see this region's nucleotide sequence