Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03385

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03380 and AMB_RS03385 are separated by 599 nucleotides AMB_RS03380: AMB_RS03380 - hypothetical protein, at 707,371 to 708,591 _RS03380 AMB_RS03385: AMB_RS03385 - hypothetical protein, at 709,191 to 710,666 _RS03385 Position (kb) 709 710 711Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 708.205 kb on + strand, within AMB_RS03380at 708.205 kb on + strand, within AMB_RS03380at 708.205 kb on + strand, within AMB_RS03380at 708.205 kb on + strand, within AMB_RS03380at 708.205 kb on + strand, within AMB_RS03380at 708.205 kb on + strand, within AMB_RS03380at 708.205 kb on + strand, within AMB_RS03380at 708.206 kb on - strand, within AMB_RS03380at 708.206 kb on - strand, within AMB_RS03380at 708.206 kb on - strand, within AMB_RS03380at 708.206 kb on - strand, within AMB_RS03380at 708.206 kb on - strand, within AMB_RS03380at 708.206 kb on - strand, within AMB_RS03380at 708.208 kb on + strand, within AMB_RS03380at 708.208 kb on + strand, within AMB_RS03380at 708.208 kb on + strand, within AMB_RS03380at 708.209 kb on - strand, within AMB_RS03380at 708.209 kb on - strand, within AMB_RS03380at 708.209 kb on - strand, within AMB_RS03380at 708.209 kb on - strand, within AMB_RS03380at 708.209 kb on - strand, within AMB_RS03380at 708.316 kb on + strand, within AMB_RS03380at 708.317 kb on - strand, within AMB_RS03380at 708.317 kb on - strand, within AMB_RS03380at 708.344 kb on + strand, within AMB_RS03380at 708.344 kb on + strand, within AMB_RS03380at 708.344 kb on + strand, within AMB_RS03380at 708.344 kb on + strand, within AMB_RS03380at 708.345 kb on - strand, within AMB_RS03380at 708.420 kb on + strand, within AMB_RS03380at 708.421 kb on - strand, within AMB_RS03380at 708.471 kb on - strandat 708.482 kb on + strandat 708.561 kb on + strandat 708.581 kb on + strandat 708.581 kb on + strandat 708.581 kb on + strandat 708.590 kb on - strandat 708.628 kb on + strandat 708.628 kb on + strandat 708.628 kb on + strandat 708.628 kb on + strandat 708.628 kb on + strandat 708.629 kb on - strandat 708.722 kb on + strandat 708.723 kb on - strandat 708.766 kb on + strandat 708.766 kb on + strandat 708.766 kb on + strandat 708.766 kb on + strandat 708.766 kb on + strandat 708.767 kb on - strandat 708.767 kb on - strandat 708.767 kb on - strandat 708.767 kb on - strandat 708.767 kb on - strandat 708.767 kb on - strandat 708.767 kb on - strandat 708.823 kb on + strandat 708.824 kb on - strandat 708.845 kb on + strandat 708.845 kb on + strandat 708.845 kb on + strandat 708.845 kb on + strandat 708.845 kb on + strandat 708.846 kb on - strandat 708.846 kb on - strandat 708.846 kb on - strandat 708.846 kb on - strandat 708.846 kb on - strandat 708.846 kb on - strandat 708.846 kb on - strandat 708.922 kb on + strandat 709.407 kb on + strand, within AMB_RS03385at 709.407 kb on + strand, within AMB_RS03385at 709.408 kb on - strand, within AMB_RS03385at 709.411 kb on + strand, within AMB_RS03385at 709.412 kb on - strand, within AMB_RS03385at 709.412 kb on - strand, within AMB_RS03385at 709.412 kb on - strand, within AMB_RS03385at 709.412 kb on - strand, within AMB_RS03385at 709.486 kb on + strand, within AMB_RS03385at 709.550 kb on + strand, within AMB_RS03385at 709.550 kb on + strand, within AMB_RS03385at 709.551 kb on - strand, within AMB_RS03385at 709.590 kb on + strand, within AMB_RS03385at 709.590 kb on + strand, within AMB_RS03385at 709.590 kb on + strand, within AMB_RS03385at 709.590 kb on + strand, within AMB_RS03385at 709.591 kb on - strand, within AMB_RS03385at 709.591 kb on - strand, within AMB_RS03385at 709.591 kb on - strand, within AMB_RS03385at 709.623 kb on + strand, within AMB_RS03385at 709.623 kb on + strand, within AMB_RS03385at 709.623 kb on + strand, within AMB_RS03385at 709.624 kb on - strand, within AMB_RS03385at 709.624 kb on - strand, within AMB_RS03385at 709.624 kb on - strand, within AMB_RS03385at 709.624 kb on - strand, within AMB_RS03385at 709.624 kb on - strand, within AMB_RS03385at 709.728 kb on + strand, within AMB_RS03385at 709.728 kb on + strand, within AMB_RS03385at 709.728 kb on + strand, within AMB_RS03385at 709.754 kb on + strand, within AMB_RS03385at 709.754 kb on + strand, within AMB_RS03385at 709.754 kb on + strand, within AMB_RS03385at 709.755 kb on - strand, within AMB_RS03385at 709.808 kb on + strand, within AMB_RS03385at 709.833 kb on - strand, within AMB_RS03385at 709.833 kb on - strand, within AMB_RS03385at 709.968 kb on + strand, within AMB_RS03385at 709.968 kb on + strand, within AMB_RS03385at 709.968 kb on + strand, within AMB_RS03385at 709.969 kb on - strand, within AMB_RS03385at 709.969 kb on - strand, within AMB_RS03385at 709.969 kb on - strand, within AMB_RS03385at 710.006 kb on + strand, within AMB_RS03385at 710.031 kb on + strand, within AMB_RS03385at 710.032 kb on - strand, within AMB_RS03385at 710.032 kb on - strand, within AMB_RS03385at 710.032 kb on - strand, within AMB_RS03385at 710.032 kb on - strand, within AMB_RS03385at 710.098 kb on + strand, within AMB_RS03385at 710.099 kb on - strand, within AMB_RS03385at 710.099 kb on - strand, within AMB_RS03385at 710.099 kb on - strand, within AMB_RS03385at 710.174 kb on + strand, within AMB_RS03385at 710.174 kb on + strand, within AMB_RS03385at 710.175 kb on - strand, within AMB_RS03385at 710.252 kb on + strand, within AMB_RS03385at 710.253 kb on - strand, within AMB_RS03385at 710.253 kb on - strand, within AMB_RS03385at 710.509 kb on + strand, within AMB_RS03385at 710.547 kb on - strandat 710.547 kb on - strandat 710.664 kb on + strandat 710.760 kb on + strandat 710.761 kb on - strandat 710.897 kb on + strandat 710.897 kb on + strandat 710.898 kb on - strandat 710.898 kb on - strandat 710.898 kb on - strandat 710.898 kb on - strandat 710.898 kb on - strandat 710.898 kb on - strandat 710.943 kb on + strandat 710.943 kb on + strandat 710.943 kb on + strandat 711.075 kb on - strandat 711.152 kb on + strandat 711.255 kb on + strandat 711.255 kb on + strandat 711.296 kb on + strandat 711.296 kb on + strandat 711.297 kb on - strandat 711.297 kb on - strandat 711.297 kb on - strandat 711.297 kb on - strandat 711.330 kb on - strandat 711.370 kb on + strandat 711.658 kb on - strandat 711.659 kb on + strandat 711.660 kb on - strandat 711.660 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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708,205 + AMB_RS03380 0.68 -1.1
708,205 + AMB_RS03380 0.68 -1.5
708,205 + AMB_RS03380 0.68 -2.4
708,205 + AMB_RS03380 0.68 -1.9
708,205 + AMB_RS03380 0.68 +0.5
708,205 + AMB_RS03380 0.68 +0.5
708,205 + AMB_RS03380 0.68 -3.1
708,206 - AMB_RS03380 0.68 -0.5
708,206 - AMB_RS03380 0.68 -1.1
708,206 - AMB_RS03380 0.68 +0.5
708,206 - AMB_RS03380 0.68 -0.5
708,206 - AMB_RS03380 0.68 +0.1
708,206 - AMB_RS03380 0.68 -1.9
708,208 + AMB_RS03380 0.69 +1.5
708,208 + AMB_RS03380 0.69 -1.9
708,208 + AMB_RS03380 0.69 -0.5
708,209 - AMB_RS03380 0.69 -1.9
708,209 - AMB_RS03380 0.69 -1.1
708,209 - AMB_RS03380 0.69 -0.5
708,209 - AMB_RS03380 0.69 +0.5
708,209 - AMB_RS03380 0.69 -0.5
708,316 + AMB_RS03380 0.77 -1.1
708,317 - AMB_RS03380 0.77 +0.0
708,317 - AMB_RS03380 0.77 -1.1
708,344 + AMB_RS03380 0.80 -0.5
708,344 + AMB_RS03380 0.80 -1.9
708,344 + AMB_RS03380 0.80 +0.5
708,344 + AMB_RS03380 0.80 -0.5
708,345 - AMB_RS03380 0.80 -2.4
708,420 + AMB_RS03380 0.86 -0.7
708,421 - AMB_RS03380 0.86 -0.5
708,471 - +0.3
708,482 + +1.5
708,561 + -0.9
708,581 + -2.4
708,581 + +0.5
708,581 + -2.1
708,590 - -2.4
708,628 + +0.5
708,628 + +0.5
708,628 + -0.5
708,628 + -0.7
708,628 + +0.5
708,629 - -3.0
708,722 + -1.1
708,723 - +0.5
708,766 + -1.9
708,766 + -1.9
708,766 + -0.3
708,766 + -3.2
708,766 + -0.5
708,767 - -0.3
708,767 - -2.4
708,767 - -2.1
708,767 - -0.0
708,767 - -1.5
708,767 - -0.1
708,767 - -1.1
708,823 + -2.7
708,824 - -3.3
708,845 + -2.5
708,845 + +0.5
708,845 + -1.9
708,845 + -0.2
708,845 + -0.1
708,846 - -2.1
708,846 - -0.5
708,846 - -2.5
708,846 - -0.2
708,846 - -4.3
708,846 - +0.5
708,846 - -1.5
708,922 + -0.5
709,407 + AMB_RS03385 0.15 -2.7
709,407 + AMB_RS03385 0.15 -3.4
709,408 - AMB_RS03385 0.15 -2.7
709,411 + AMB_RS03385 0.15 +0.5
709,412 - AMB_RS03385 0.15 -1.5
709,412 - AMB_RS03385 0.15 -0.5
709,412 - AMB_RS03385 0.15 -3.6
709,412 - AMB_RS03385 0.15 -0.5
709,486 + AMB_RS03385 0.20 +0.5
709,550 + AMB_RS03385 0.24 -3.2
709,550 + AMB_RS03385 0.24 -0.5
709,551 - AMB_RS03385 0.24 +0.0
709,590 + AMB_RS03385 0.27 -0.5
709,590 + AMB_RS03385 0.27 -1.1
709,590 + AMB_RS03385 0.27 +0.5
709,590 + AMB_RS03385 0.27 -1.5
709,591 - AMB_RS03385 0.27 -2.7
709,591 - AMB_RS03385 0.27 -1.1
709,591 - AMB_RS03385 0.27 -2.4
709,623 + AMB_RS03385 0.29 +0.5
709,623 + AMB_RS03385 0.29 +0.1
709,623 + AMB_RS03385 0.29 -1.5
709,624 - AMB_RS03385 0.29 -0.7
709,624 - AMB_RS03385 0.29 +0.5
709,624 - AMB_RS03385 0.29 -1.9
709,624 - AMB_RS03385 0.29 -0.5
709,624 - AMB_RS03385 0.29 -2.2
709,728 + AMB_RS03385 0.36 +0.5
709,728 + AMB_RS03385 0.36 +0.5
709,728 + AMB_RS03385 0.36 +0.2
709,754 + AMB_RS03385 0.38 -3.6
709,754 + AMB_RS03385 0.38 -2.1
709,754 + AMB_RS03385 0.38 -1.5
709,755 - AMB_RS03385 0.38 -2.7
709,808 + AMB_RS03385 0.42 -0.5
709,833 - AMB_RS03385 0.43 +0.5
709,833 - AMB_RS03385 0.43 -1.9
709,968 + AMB_RS03385 0.53 +0.5
709,968 + AMB_RS03385 0.53 -1.1
709,968 + AMB_RS03385 0.53 +0.5
709,969 - AMB_RS03385 0.53 -0.5
709,969 - AMB_RS03385 0.53 -1.1
709,969 - AMB_RS03385 0.53 -2.4
710,006 + AMB_RS03385 0.55 -3.2
710,031 + AMB_RS03385 0.57 -2.3
710,032 - AMB_RS03385 0.57 +0.5
710,032 - AMB_RS03385 0.57 +0.5
710,032 - AMB_RS03385 0.57 +0.5
710,032 - AMB_RS03385 0.57 -0.3
710,098 + AMB_RS03385 0.61 -2.7
710,099 - AMB_RS03385 0.62 -1.5
710,099 - AMB_RS03385 0.62 +0.5
710,099 - AMB_RS03385 0.62 -0.5
710,174 + AMB_RS03385 0.67 -2.9
710,174 + AMB_RS03385 0.67 +0.5
710,175 - AMB_RS03385 0.67 -1.9
710,252 + AMB_RS03385 0.72 -3.1
710,253 - AMB_RS03385 0.72 +0.5
710,253 - AMB_RS03385 0.72 -1.7
710,509 + AMB_RS03385 0.89 +0.1
710,547 - -3.1
710,547 - +0.5
710,664 + -0.5
710,760 + -1.1
710,761 - -2.5
710,897 + +0.5
710,897 + -1.9
710,898 - -1.5
710,898 - -1.9
710,898 - -1.1
710,898 - -0.1
710,898 - +0.5
710,898 - -1.5
710,943 + +0.2
710,943 + -0.5
710,943 + -3.2
711,075 - -1.1
711,152 + -0.5
711,255 + -1.9
711,255 + -0.4
711,296 + -1.9
711,296 + -0.5
711,297 - +0.5
711,297 - -0.5
711,297 - -0.8
711,297 - +0.5
711,330 - -3.5
711,370 + -1.5
711,658 - +0.5
711,659 + -2.5
711,660 - +0.5
711,660 - +0.5

Or see this region's nucleotide sequence