Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03330 and AMB_RS03335 are separated by 10 nucleotides AMB_RS03335 and AMB_RS03340 overlap by 7 nucleotides AMB_RS03340 and AMB_RS03345 are separated by 235 nucleotides
AMB_RS03330: AMB_RS03330 - IS3 family transposase, at 695,580 to 696,745
_RS03330
AMB_RS03335: AMB_RS03335 - hypothetical protein, at 696,756 to 697,358
_RS03335
AMB_RS03340: AMB_RS03340 - transposase, at 697,352 to 697,621
_RS03340
AMB_RS03345: AMB_RS03345 - hypothetical protein, at 697,857 to 701,930
_RS03345
Position (kb) 696
697
698 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 696.590 kb on + strand, within AMB_RS03330 at 697.700 kb on + strand at 697.701 kb on - strand at 697.805 kb on - strand at 697.822 kb on + strand at 697.823 kb on - strand at 697.873 kb on + strand at 697.873 kb on + strand at 697.874 kb on - strand at 698.066 kb on - strand at 698.066 kb on - strand at 698.066 kb on - strand at 698.111 kb on + strand at 698.111 kb on + strand at 698.112 kb on - strand at 698.112 kb on - strand at 698.183 kb on + strand at 698.211 kb on - strand at 698.283 kb on + strand, within AMB_RS03345 at 698.284 kb on - strand, within AMB_RS03345 at 698.284 kb on - strand, within AMB_RS03345
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 696,590 + AMB_RS03330 0.87 +0.5 697,700 + +0.5 697,701 - -0.5 697,805 - -1.5 697,822 + -2.5 697,823 - +0.5 697,873 + -0.3 697,873 + -2.4 697,874 - +0.5 698,066 - -2.4 698,066 - -2.4 698,066 - -0.5 698,111 + -1.9 698,111 + -2.1 698,112 - +1.5 698,112 - -1.1 698,183 + +1.5 698,211 - +0.5 698,283 + AMB_RS03345 0.10 -3.2 698,284 - AMB_RS03345 0.10 -2.1 698,284 - AMB_RS03345 0.10 -0.4
Or see this region's nucleotide sequence