Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03320 and AMB_RS03330 are separated by 237 nucleotides AMB_RS03330 and AMB_RS03335 are separated by 10 nucleotides AMB_RS03335 and AMB_RS03340 overlap by 7 nucleotides
AMB_RS03320: AMB_RS03320 - hypothetical protein, at 694,794 to 695,342
_RS03320
AMB_RS03330: AMB_RS03330 - IS3 family transposase, at 695,580 to 696,745
_RS03330
AMB_RS03335: AMB_RS03335 - hypothetical protein, at 696,756 to 697,358
_RS03335
AMB_RS03340: AMB_RS03340 - transposase, at 697,352 to 697,621
_RS03340
Position (kb) 695
696
697 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 694.597 kb on + strand at 694.634 kb on + strand at 694.635 kb on - strand at 694.654 kb on + strand at 694.666 kb on - strand at 694.741 kb on + strand at 694.742 kb on - strand at 694.742 kb on - strand at 694.806 kb on + strand at 694.806 kb on + strand at 694.806 kb on + strand at 694.807 kb on - strand at 694.807 kb on - strand at 694.822 kb on - strand at 694.822 kb on - strand at 694.835 kb on + strand at 694.836 kb on - strand at 694.878 kb on + strand, within AMB_RS03320 at 694.879 kb on - strand, within AMB_RS03320 at 694.908 kb on + strand, within AMB_RS03320 at 694.908 kb on + strand, within AMB_RS03320 at 694.908 kb on + strand, within AMB_RS03320 at 694.908 kb on + strand, within AMB_RS03320 at 694.908 kb on + strand, within AMB_RS03320 at 694.909 kb on - strand, within AMB_RS03320 at 695.019 kb on - strand, within AMB_RS03320 at 695.030 kb on + strand, within AMB_RS03320 at 695.070 kb on + strand, within AMB_RS03320 at 695.070 kb on + strand, within AMB_RS03320 at 695.070 kb on + strand, within AMB_RS03320 at 695.071 kb on - strand, within AMB_RS03320 at 695.071 kb on - strand, within AMB_RS03320 at 695.071 kb on - strand, within AMB_RS03320 at 695.105 kb on + strand, within AMB_RS03320 at 695.106 kb on - strand, within AMB_RS03320 at 695.218 kb on + strand, within AMB_RS03320 at 695.218 kb on + strand, within AMB_RS03320 at 695.218 kb on + strand, within AMB_RS03320 at 695.218 kb on + strand, within AMB_RS03320 at 695.218 kb on + strand, within AMB_RS03320 at 695.219 kb on - strand, within AMB_RS03320 at 695.219 kb on - strand, within AMB_RS03320 at 695.219 kb on - strand, within AMB_RS03320 at 695.232 kb on + strand, within AMB_RS03320 at 695.232 kb on + strand, within AMB_RS03320 at 695.233 kb on - strand, within AMB_RS03320 at 695.233 kb on - strand, within AMB_RS03320 at 695.283 kb on + strand, within AMB_RS03320 at 695.283 kb on + strand, within AMB_RS03320 at 695.283 kb on + strand, within AMB_RS03320 at 695.283 kb on + strand, within AMB_RS03320 at 695.283 kb on + strand, within AMB_RS03320 at 695.283 kb on + strand, within AMB_RS03320 at 695.283 kb on + strand, within AMB_RS03320 at 695.284 kb on - strand, within AMB_RS03320 at 695.284 kb on - strand, within AMB_RS03320 at 695.284 kb on - strand, within AMB_RS03320 at 695.284 kb on - strand, within AMB_RS03320 at 695.352 kb on + strand at 695.353 kb on - strand at 695.353 kb on - strand at 695.356 kb on + strand at 695.356 kb on + strand at 695.356 kb on + strand at 695.356 kb on + strand at 695.356 kb on + strand at 695.356 kb on + strand at 695.356 kb on + strand at 695.357 kb on - strand at 695.357 kb on - strand at 695.357 kb on - strand at 695.357 kb on - strand at 695.368 kb on + strand at 695.496 kb on + strand at 695.496 kb on + strand at 695.496 kb on + strand at 695.497 kb on - strand at 695.497 kb on - strand at 695.497 kb on - strand at 695.497 kb on - strand at 695.497 kb on - strand at 695.551 kb on - strand at 696.590 kb on + strand, within AMB_RS03330 at 697.700 kb on + strand at 697.701 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 694,597 + -1.5 694,634 + +0.5 694,635 - -0.5 694,654 + -0.5 694,666 - -0.7 694,741 + +0.5 694,742 - -3.0 694,742 - +0.5 694,806 + +0.5 694,806 + -1.2 694,806 + -1.1 694,807 - -0.5 694,807 - -0.5 694,822 - -2.0 694,822 - +0.5 694,835 + -1.5 694,836 - +0.5 694,878 + AMB_RS03320 0.15 -1.9 694,879 - AMB_RS03320 0.15 +0.5 694,908 + AMB_RS03320 0.21 -2.0 694,908 + AMB_RS03320 0.21 -1.1 694,908 + AMB_RS03320 0.21 -2.4 694,908 + AMB_RS03320 0.21 +0.0 694,908 + AMB_RS03320 0.21 -0.1 694,909 - AMB_RS03320 0.21 +0.5 695,019 - AMB_RS03320 0.41 +0.5 695,030 + AMB_RS03320 0.43 -1.9 695,070 + AMB_RS03320 0.50 -1.5 695,070 + AMB_RS03320 0.50 +0.5 695,070 + AMB_RS03320 0.50 +1.5 695,071 - AMB_RS03320 0.50 -1.7 695,071 - AMB_RS03320 0.50 +0.5 695,071 - AMB_RS03320 0.50 -1.0 695,105 + AMB_RS03320 0.57 -0.5 695,106 - AMB_RS03320 0.57 -2.4 695,218 + AMB_RS03320 0.77 +0.5 695,218 + AMB_RS03320 0.77 -1.5 695,218 + AMB_RS03320 0.77 +0.5 695,218 + AMB_RS03320 0.77 -0.0 695,218 + AMB_RS03320 0.77 -3.5 695,219 - AMB_RS03320 0.77 +0.5 695,219 - AMB_RS03320 0.77 -0.5 695,219 - AMB_RS03320 0.77 +0.5 695,232 + AMB_RS03320 0.80 +0.5 695,232 + AMB_RS03320 0.80 -2.4 695,233 - AMB_RS03320 0.80 -2.9 695,233 - AMB_RS03320 0.80 -2.4 695,283 + AMB_RS03320 0.89 -0.0 695,283 + AMB_RS03320 0.89 +0.1 695,283 + AMB_RS03320 0.89 -0.5 695,283 + AMB_RS03320 0.89 -0.5 695,283 + AMB_RS03320 0.89 -0.5 695,283 + AMB_RS03320 0.89 -1.5 695,283 + AMB_RS03320 0.89 +0.1 695,284 - AMB_RS03320 0.89 -0.5 695,284 - AMB_RS03320 0.89 -1.1 695,284 - AMB_RS03320 0.89 -0.5 695,284 - AMB_RS03320 0.89 +0.5 695,352 + -0.5 695,353 - -3.0 695,353 - -0.0 695,356 + +0.5 695,356 + -0.5 695,356 + -0.0 695,356 + -1.1 695,356 + -0.5 695,356 + +1.5 695,356 + -0.5 695,357 - -0.9 695,357 - +0.5 695,357 - -1.5 695,357 - -1.1 695,368 + +0.5 695,496 + -1.1 695,496 + -0.5 695,496 + -0.5 695,497 - -0.5 695,497 - -0.5 695,497 - +0.5 695,497 - -1.1 695,497 - +0.5 695,551 - -1.7 696,590 + AMB_RS03330 0.87 +0.5 697,700 + +0.5 697,701 - -0.5
Or see this region's nucleotide sequence