Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03130

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03120 and AMB_RS03125 are separated by 105 nucleotidesAMB_RS03125 and AMB_RS03130 are separated by 144 nucleotidesAMB_RS03130 and AMB_RS03135 are separated by 248 nucleotides AMB_RS03120: AMB_RS03120 - phosphatidylserine decarboxylase family protein, at 651,073 to 651,795 _RS03120 AMB_RS03125: AMB_RS03125 - hypothetical protein, at 651,901 to 652,410 _RS03125 AMB_RS03130: AMB_RS03130 - LysM peptidoglycan-binding domain-containing protein, at 652,555 to 653,499 _RS03130 AMB_RS03135: AMB_RS03135 - NADP-dependent isocitrate dehydrogenase, at 653,748 to 655,973 _RS03135 Position (kb) 652 653 654Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 651.840 kb on - strandat 651.840 kb on - strandat 651.843 kb on - strandat 651.843 kb on - strandat 651.866 kb on - strandat 651.866 kb on - strandat 651.900 kb on + strandat 651.900 kb on + strandat 651.900 kb on + strandat 651.900 kb on + strandat 651.900 kb on + strandat 651.900 kb on + strandat 651.901 kb on - strandat 651.901 kb on - strandat 651.901 kb on - strandat 652.114 kb on + strand, within AMB_RS03125at 652.114 kb on + strand, within AMB_RS03125at 652.115 kb on - strand, within AMB_RS03125at 652.309 kb on + strand, within AMB_RS03125at 652.309 kb on + strand, within AMB_RS03125at 652.309 kb on + strand, within AMB_RS03125at 652.309 kb on + strand, within AMB_RS03125at 652.310 kb on - strand, within AMB_RS03125at 652.310 kb on - strand, within AMB_RS03125at 652.311 kb on + strand, within AMB_RS03125at 652.312 kb on - strand, within AMB_RS03125at 652.312 kb on - strand, within AMB_RS03125at 652.312 kb on - strand, within AMB_RS03125at 652.330 kb on + strand, within AMB_RS03125at 652.330 kb on + strand, within AMB_RS03125at 652.330 kb on + strand, within AMB_RS03125at 652.330 kb on + strand, within AMB_RS03125at 652.330 kb on + strand, within AMB_RS03125at 652.331 kb on - strand, within AMB_RS03125at 652.331 kb on - strand, within AMB_RS03125at 652.331 kb on - strand, within AMB_RS03125at 652.422 kb on - strandat 652.452 kb on + strandat 652.540 kb on + strandat 652.540 kb on + strandat 652.540 kb on + strandat 652.540 kb on + strandat 652.641 kb on + strandat 652.641 kb on + strandat 652.641 kb on + strandat 652.642 kb on - strandat 652.643 kb on + strandat 652.643 kb on + strandat 652.643 kb on + strandat 652.643 kb on + strandat 652.643 kb on + strandat 652.644 kb on - strandat 652.662 kb on - strand, within AMB_RS03130at 652.905 kb on - strand, within AMB_RS03130at 653.487 kb on + strandat 653.487 kb on + strandat 653.488 kb on - strandat 653.546 kb on + strandat 653.546 kb on + strandat 653.547 kb on - strandat 653.641 kb on - strandat 653.721 kb on + strandat 653.740 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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651,840 - -0.9
651,840 - -3.8
651,843 - +0.4
651,843 - -0.6
651,866 - -0.6
651,866 - -2.1
651,900 + -0.6
651,900 + -0.6
651,900 + +0.4
651,900 + -1.9
651,900 + +0.4
651,900 + +0.4
651,901 - +0.4
651,901 - -0.6
651,901 - -1.1
652,114 + AMB_RS03125 0.42 +0.4
652,114 + AMB_RS03125 0.42 +0.4
652,115 - AMB_RS03125 0.42 -3.5
652,309 + AMB_RS03125 0.80 -0.1
652,309 + AMB_RS03125 0.80 -0.2
652,309 + AMB_RS03125 0.80 -1.1
652,309 + AMB_RS03125 0.80 -1.1
652,310 - AMB_RS03125 0.80 -0.6
652,310 - AMB_RS03125 0.80 -1.1
652,311 + AMB_RS03125 0.80 -1.1
652,312 - AMB_RS03125 0.81 +0.4
652,312 - AMB_RS03125 0.81 -1.6
652,312 - AMB_RS03125 0.81 +0.4
652,330 + AMB_RS03125 0.84 +1.4
652,330 + AMB_RS03125 0.84 +0.4
652,330 + AMB_RS03125 0.84 +0.4
652,330 + AMB_RS03125 0.84 -1.1
652,330 + AMB_RS03125 0.84 +0.4
652,331 - AMB_RS03125 0.84 +0.4
652,331 - AMB_RS03125 0.84 -0.6
652,331 - AMB_RS03125 0.84 +0.4
652,422 - -1.6
652,452 + -1.6
652,540 + -1.1
652,540 + -1.7
652,540 + +0.4
652,540 + -1.1
652,641 + +0.4
652,641 + +0.4
652,641 + -2.7
652,642 - +0.4
652,643 + +0.4
652,643 + +0.4
652,643 + -0.6
652,643 + -0.1
652,643 + -1.9
652,644 - +0.4
652,662 - AMB_RS03130 0.11 -1.6
652,905 - AMB_RS03130 0.37 -3.4
653,487 + -1.1
653,487 + +0.4
653,488 - -1.9
653,546 + -0.6
653,546 + -0.6
653,547 - -0.6
653,641 - +0.4
653,721 + -2.9
653,740 + +0.1

Or see this region's nucleotide sequence