Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03065

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03055 and AMB_RS03060 overlap by 4 nucleotidesAMB_RS03060 and AMB_RS03065 are separated by 0 nucleotidesAMB_RS03065 and AMB_RS03070 are separated by 121 nucleotidesAMB_RS03070 and AMB_RS03075 overlap by 1 nucleotides AMB_RS03055: AMB_RS03055 - hypothetical protein, at 639,260 to 640,081 _RS03055 AMB_RS03060: AMB_RS03060 - peptidoglycan editing factor PgeF, at 640,078 to 640,848 _RS03060 AMB_RS03065: AMB_RS03065 - class I SAM-dependent methyltransferase, at 640,849 to 641,922 _RS03065 AMB_RS03070: AMB_RS03070 - prolipoprotein diacylglyceryl transferase, at 642,044 to 642,853 _RS03070 AMB_RS03075: AMB_RS03075 - ADP-glyceromanno-heptose 6-epimerase, at 642,853 to 643,839 _RS03075 Position (kb) 640 641 642Strain fitness (log2 ratio) -1 0 1at 640.148 kb on + strandat 640.149 kb on - strandat 640.238 kb on + strand, within AMB_RS03060at 640.238 kb on + strand, within AMB_RS03060at 640.239 kb on - strand, within AMB_RS03060at 640.352 kb on + strand, within AMB_RS03060at 640.435 kb on - strand, within AMB_RS03060at 640.851 kb on - strandat 640.851 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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640,148 + -0.1
640,149 - -0.9
640,238 + AMB_RS03060 0.21 -1.2
640,238 + AMB_RS03060 0.21 -1.6
640,239 - AMB_RS03060 0.21 -1.2
640,352 + AMB_RS03060 0.36 -1.2
640,435 - AMB_RS03060 0.46 -0.6
640,851 - -1.6
640,851 - +1.4

Or see this region's nucleotide sequence