Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02970 and AMB_RS02975 are separated by 217 nucleotides AMB_RS02975 and AMB_RS02980 are separated by 4 nucleotides
AMB_RS02970: AMB_RS02970 - alpha-D-glucose phosphate-specific phosphoglucomutase, at 621,446 to 623,074
_RS02970
AMB_RS02975: AMB_RS02975 - hypothetical protein, at 623,292 to 624,044
_RS02975
AMB_RS02980: AMB_RS02980 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 624,049 to 625,356
_RS02980
Position (kb) 623
624
625 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 622.615 kb on - strand, within AMB_RS02970 at 622.615 kb on - strand, within AMB_RS02970 at 623.343 kb on + strand at 623.343 kb on + strand at 623.344 kb on - strand at 623.344 kb on - strand at 623.571 kb on + strand, within AMB_RS02975 at 623.745 kb on + strand, within AMB_RS02975 at 623.746 kb on - strand, within AMB_RS02975 at 623.746 kb on - strand, within AMB_RS02975 at 623.763 kb on + strand, within AMB_RS02975 at 623.764 kb on - strand, within AMB_RS02975 at 623.766 kb on + strand, within AMB_RS02975 at 623.766 kb on + strand, within AMB_RS02975 at 623.767 kb on - strand, within AMB_RS02975 at 623.835 kb on + strand, within AMB_RS02975 at 624.050 kb on + strand at 624.051 kb on - strand at 624.051 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 622,615 - AMB_RS02970 0.72 -0.2 622,615 - AMB_RS02970 0.72 -1.2 623,343 + +0.4 623,343 + -2.9 623,344 - -2.8 623,344 - +0.4 623,571 + AMB_RS02975 0.37 +0.4 623,745 + AMB_RS02975 0.60 -2.4 623,746 - AMB_RS02975 0.60 +0.4 623,746 - AMB_RS02975 0.60 +0.4 623,763 + AMB_RS02975 0.63 +0.4 623,764 - AMB_RS02975 0.63 -1.6 623,766 + AMB_RS02975 0.63 -3.7 623,766 + AMB_RS02975 0.63 -0.6 623,767 - AMB_RS02975 0.63 +0.4 623,835 + AMB_RS02975 0.72 -1.6 624,050 + -3.2 624,051 - +0.4 624,051 - -0.0
Or see this region's nucleotide sequence