Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02890 and AMB_RS02895 are separated by 6 nucleotides AMB_RS02895 and AMB_RS02900 are separated by 186 nucleotides AMB_RS02900 and AMB_RS02905 are separated by 47 nucleotides AMB_RS02905 and AMB_RS02910 are separated by 7 nucleotides AMB_RS02910 and AMB_RS02915 overlap by 2 nucleotides
AMB_RS02890: AMB_RS02890 - hypothetical protein, at 607,192 to 607,623
_RS02890
AMB_RS02895: AMB_RS02895 - response regulator, at 607,630 to 608,049
_RS02895
AMB_RS02900: AMB_RS02900 - hypothetical protein, at 608,236 to 608,772
_RS02900
AMB_RS02905: AMB_RS02905 - hypothetical protein, at 608,820 to 609,068
_RS02905
AMB_RS02910: AMB_RS02910 - 4a-hydroxytetrahydrobiopterin dehydratase, at 609,076 to 609,474
_RS02910
AMB_RS02915: AMB_RS02915 - hypothetical protein, at 609,473 to 609,868
_RS02915
Position (kb) 608
609 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 607.539 kb on - strand, within AMB_RS02890 at 607.631 kb on + strand at 607.631 kb on + strand at 608.004 kb on + strand, within AMB_RS02895 at 608.004 kb on + strand, within AMB_RS02895 at 608.004 kb on + strand, within AMB_RS02895 at 608.004 kb on + strand, within AMB_RS02895 at 608.121 kb on + strand at 608.121 kb on + strand at 608.156 kb on + strand at 608.156 kb on + strand at 608.160 kb on - strand at 608.163 kb on - strand at 608.166 kb on + strand at 608.170 kb on + strand at 608.540 kb on + strand, within AMB_RS02900 at 608.541 kb on - strand, within AMB_RS02900 at 608.663 kb on + strand, within AMB_RS02900 at 608.663 kb on + strand, within AMB_RS02900 at 608.806 kb on - strand at 609.052 kb on + strand at 609.053 kb on - strand at 609.077 kb on + strand at 609.077 kb on + strand at 609.078 kb on - strand at 609.078 kb on - strand at 609.078 kb on - strand at 609.450 kb on - strand at 609.450 kb on - strand at 609.466 kb on + strand at 609.772 kb on + strand, within AMB_RS02915 at 609.772 kb on + strand, within AMB_RS02915
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 607,539 - AMB_RS02890 0.80 -0.6 607,631 + -1.6 607,631 + +0.4 608,004 + AMB_RS02895 0.89 -2.0 608,004 + AMB_RS02895 0.89 -2.6 608,004 + AMB_RS02895 0.89 -1.9 608,004 + AMB_RS02895 0.89 -0.6 608,121 + -2.4 608,121 + +0.4 608,156 + -3.0 608,156 + -0.6 608,160 - -0.1 608,163 - -0.3 608,166 + -0.6 608,170 + +0.4 608,540 + AMB_RS02900 0.57 -0.6 608,541 - AMB_RS02900 0.57 -2.6 608,663 + AMB_RS02900 0.80 -2.7 608,663 + AMB_RS02900 0.80 -2.2 608,806 - -0.1 609,052 + -1.6 609,053 - -1.4 609,077 + -0.9 609,077 + -1.6 609,078 - -1.4 609,078 - +0.2 609,078 - +0.4 609,450 - -0.5 609,450 - -1.9 609,466 + -0.2 609,772 + AMB_RS02915 0.76 +0.4 609,772 + AMB_RS02915 0.76 -1.6
Or see this region's nucleotide sequence