Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02880 and AMB_RS02885 are separated by 65 nucleotides AMB_RS02885 and AMB_RS02890 overlap by 24 nucleotides AMB_RS02890 and AMB_RS02895 are separated by 6 nucleotides
AMB_RS02880: AMB_RS02880 - hypothetical protein, at 605,690 to 605,962
_RS02880
AMB_RS02885: AMB_RS02885 - sel1 repeat family protein, at 606,028 to 607,215
_RS02885
AMB_RS02890: AMB_RS02890 - hypothetical protein, at 607,192 to 607,623
_RS02890
AMB_RS02895: AMB_RS02895 - response regulator, at 607,630 to 608,049
_RS02895
Position (kb) 606
607
608 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 605.279 kb on - strand at 605.414 kb on - strand at 605.414 kb on - strand at 605.456 kb on - strand at 605.633 kb on + strand at 605.634 kb on - strand at 605.634 kb on - strand at 605.701 kb on - strand at 605.826 kb on + strand, within AMB_RS02880 at 605.827 kb on - strand, within AMB_RS02880 at 605.827 kb on - strand, within AMB_RS02880 at 605.953 kb on + strand at 605.960 kb on + strand at 605.960 kb on + strand at 605.960 kb on + strand at 605.961 kb on - strand at 607.048 kb on + strand, within AMB_RS02885 at 607.539 kb on - strand, within AMB_RS02890 at 607.631 kb on + strand at 607.631 kb on + strand at 608.004 kb on + strand, within AMB_RS02895 at 608.004 kb on + strand, within AMB_RS02895 at 608.004 kb on + strand, within AMB_RS02895 at 608.004 kb on + strand, within AMB_RS02895 at 608.121 kb on + strand at 608.121 kb on + strand at 608.156 kb on + strand at 608.156 kb on + strand at 608.160 kb on - strand at 608.163 kb on - strand at 608.166 kb on + strand at 608.170 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 605,279 - -0.2 605,414 - -0.6 605,414 - -0.6 605,456 - -1.2 605,633 + +0.4 605,634 - -0.1 605,634 - -0.6 605,701 - -0.6 605,826 + AMB_RS02880 0.50 -1.2 605,827 - AMB_RS02880 0.50 +0.4 605,827 - AMB_RS02880 0.50 -1.6 605,953 + +0.4 605,960 + -1.6 605,960 + -0.6 605,960 + +0.4 605,961 - -0.6 607,048 + AMB_RS02885 0.86 -1.6 607,539 - AMB_RS02890 0.80 -0.6 607,631 + -1.6 607,631 + +0.4 608,004 + AMB_RS02895 0.89 -2.0 608,004 + AMB_RS02895 0.89 -2.6 608,004 + AMB_RS02895 0.89 -1.9 608,004 + AMB_RS02895 0.89 -0.6 608,121 + -2.4 608,121 + +0.4 608,156 + -3.0 608,156 + -0.6 608,160 - -0.1 608,163 - -0.3 608,166 + -0.6 608,170 + +0.4
Or see this region's nucleotide sequence