Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02790

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02780 and AMB_RS02785 are separated by 154 nucleotidesAMB_RS02785 and AMB_RS02790 are separated by 57 nucleotidesAMB_RS02790 and AMB_RS02795 are separated by 33 nucleotidesAMB_RS02795 and AMB_RS02800 overlap by 4 nucleotides AMB_RS02780: AMB_RS02780 - hypothetical protein, at 585,441 to 586,019 _RS02780 AMB_RS02785: AMB_RS02785 - hypothetical protein, at 586,174 to 586,518 _RS02785 AMB_RS02790: AMB_RS02790 - outer membrane receptor protein, at 586,576 to 588,702 _RS02790 AMB_RS02795: AMB_RS02795 - histidine phosphatase family protein, at 588,736 to 589,347 _RS02795 AMB_RS02800: AMB_RS02800 - adenosylcobinamide-GDP ribazoletransferase, at 589,344 to 590,126 _RS02800 Position (kb) 586 587 588 589Strain fitness (log2 ratio) -3 -2 -1 0 1at 585.687 kb on + strand, within AMB_RS02780at 585.687 kb on + strand, within AMB_RS02780at 585.687 kb on + strand, within AMB_RS02780at 585.688 kb on - strand, within AMB_RS02780at 585.956 kb on + strand, within AMB_RS02780at 585.956 kb on + strand, within AMB_RS02780at 585.957 kb on - strand, within AMB_RS02780at 586.056 kb on + strandat 586.517 kb on - strandat 586.930 kb on + strand, within AMB_RS02790at 586.930 kb on + strand, within AMB_RS02790at 586.930 kb on + strand, within AMB_RS02790at 586.930 kb on + strand, within AMB_RS02790at 586.931 kb on - strand, within AMB_RS02790at 586.931 kb on - strand, within AMB_RS02790at 586.931 kb on - strand, within AMB_RS02790at 586.932 kb on + strand, within AMB_RS02790at 586.933 kb on - strand, within AMB_RS02790at 587.016 kb on + strand, within AMB_RS02790at 587.066 kb on - strand, within AMB_RS02790at 587.095 kb on + strand, within AMB_RS02790at 587.095 kb on + strand, within AMB_RS02790at 587.095 kb on + strand, within AMB_RS02790at 587.095 kb on + strand, within AMB_RS02790at 587.095 kb on + strand, within AMB_RS02790at 587.095 kb on + strand, within AMB_RS02790at 587.095 kb on + strand, within AMB_RS02790at 587.095 kb on + strand, within AMB_RS02790at 587.096 kb on - strand, within AMB_RS02790at 587.096 kb on - strand, within AMB_RS02790at 587.096 kb on - strand, within AMB_RS02790at 587.097 kb on + strand, within AMB_RS02790at 587.098 kb on - strand, within AMB_RS02790at 587.098 kb on - strand, within AMB_RS02790at 587.098 kb on - strand, within AMB_RS02790at 587.098 kb on - strand, within AMB_RS02790at 587.098 kb on - strand, within AMB_RS02790at 587.168 kb on - strand, within AMB_RS02790at 587.197 kb on + strand, within AMB_RS02790at 587.197 kb on + strand, within AMB_RS02790at 587.200 kb on + strand, within AMB_RS02790at 587.200 kb on + strand, within AMB_RS02790at 587.200 kb on + strand, within AMB_RS02790at 587.200 kb on + strand, within AMB_RS02790at 587.201 kb on - strand, within AMB_RS02790at 587.201 kb on - strand, within AMB_RS02790at 587.239 kb on + strand, within AMB_RS02790at 587.239 kb on + strand, within AMB_RS02790at 587.240 kb on - strand, within AMB_RS02790at 587.393 kb on - strand, within AMB_RS02790at 587.435 kb on - strand, within AMB_RS02790at 587.448 kb on + strand, within AMB_RS02790at 587.448 kb on + strand, within AMB_RS02790at 587.448 kb on + strand, within AMB_RS02790at 587.650 kb on - strand, within AMB_RS02790at 587.650 kb on - strand, within AMB_RS02790at 587.650 kb on - strand, within AMB_RS02790at 587.733 kb on + strand, within AMB_RS02790at 587.733 kb on + strand, within AMB_RS02790at 587.791 kb on + strand, within AMB_RS02790at 587.791 kb on + strand, within AMB_RS02790at 587.791 kb on + strand, within AMB_RS02790at 587.791 kb on + strand, within AMB_RS02790at 587.926 kb on + strand, within AMB_RS02790at 587.965 kb on + strand, within AMB_RS02790at 587.965 kb on + strand, within AMB_RS02790at 587.965 kb on + strand, within AMB_RS02790at 587.966 kb on - strand, within AMB_RS02790at 587.966 kb on - strand, within AMB_RS02790at 588.028 kb on + strand, within AMB_RS02790at 588.029 kb on - strand, within AMB_RS02790at 588.029 kb on - strand, within AMB_RS02790at 588.066 kb on + strand, within AMB_RS02790at 588.066 kb on + strand, within AMB_RS02790at 588.067 kb on - strand, within AMB_RS02790at 588.067 kb on - strand, within AMB_RS02790at 588.075 kb on + strand, within AMB_RS02790at 588.075 kb on + strand, within AMB_RS02790at 588.076 kb on - strand, within AMB_RS02790at 588.134 kb on - strand, within AMB_RS02790at 588.134 kb on - strand, within AMB_RS02790at 588.142 kb on + strand, within AMB_RS02790at 588.142 kb on + strand, within AMB_RS02790at 588.142 kb on + strand, within AMB_RS02790at 588.142 kb on + strand, within AMB_RS02790at 588.142 kb on + strand, within AMB_RS02790at 588.143 kb on - strand, within AMB_RS02790at 588.154 kb on + strand, within AMB_RS02790at 588.154 kb on + strand, within AMB_RS02790at 588.154 kb on + strand, within AMB_RS02790at 588.154 kb on + strand, within AMB_RS02790at 588.154 kb on + strand, within AMB_RS02790at 588.154 kb on + strand, within AMB_RS02790at 588.155 kb on - strand, within AMB_RS02790at 588.156 kb on + strand, within AMB_RS02790at 588.177 kb on + strand, within AMB_RS02790at 588.361 kb on + strand, within AMB_RS02790at 588.361 kb on + strand, within AMB_RS02790at 588.361 kb on + strand, within AMB_RS02790at 588.361 kb on + strand, within AMB_RS02790at 588.361 kb on + strand, within AMB_RS02790at 588.361 kb on + strand, within AMB_RS02790at 588.361 kb on + strand, within AMB_RS02790at 588.362 kb on - strand, within AMB_RS02790at 588.362 kb on - strand, within AMB_RS02790at 588.362 kb on - strand, within AMB_RS02790at 588.362 kb on - strand, within AMB_RS02790at 588.362 kb on - strand, within AMB_RS02790at 588.362 kb on - strand, within AMB_RS02790at 588.362 kb on - strand, within AMB_RS02790at 588.362 kb on - strand, within AMB_RS02790at 588.523 kb on + strandat 588.580 kb on + strandat 588.581 kb on - strandat 588.583 kb on + strandat 588.583 kb on + strandat 588.583 kb on + strandat 588.583 kb on + strandat 588.583 kb on + strandat 588.584 kb on - strandat 588.584 kb on - strandat 588.584 kb on - strandat 588.608 kb on - strandat 588.743 kb on + strandat 588.744 kb on - strandat 589.353 kb on - strandat 589.353 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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585,687 + AMB_RS02780 0.42 +1.4
585,687 + AMB_RS02780 0.42 +0.4
585,687 + AMB_RS02780 0.42 -0.2
585,688 - AMB_RS02780 0.43 -0.2
585,956 + AMB_RS02780 0.89 +0.5
585,956 + AMB_RS02780 0.89 +0.4
585,957 - AMB_RS02780 0.89 -1.2
586,056 + -0.5
586,517 - -2.2
586,930 + AMB_RS02790 0.17 -1.2
586,930 + AMB_RS02790 0.17 -1.2
586,930 + AMB_RS02790 0.17 -1.6
586,930 + AMB_RS02790 0.17 -1.2
586,931 - AMB_RS02790 0.17 -0.6
586,931 - AMB_RS02790 0.17 -0.1
586,931 - AMB_RS02790 0.17 +0.4
586,932 + AMB_RS02790 0.17 -2.3
586,933 - AMB_RS02790 0.17 -1.6
587,016 + AMB_RS02790 0.21 -1.2
587,066 - AMB_RS02790 0.23 -2.7
587,095 + AMB_RS02790 0.24 -1.2
587,095 + AMB_RS02790 0.24 +0.4
587,095 + AMB_RS02790 0.24 -0.6
587,095 + AMB_RS02790 0.24 -2.5
587,095 + AMB_RS02790 0.24 -1.9
587,095 + AMB_RS02790 0.24 -0.6
587,095 + AMB_RS02790 0.24 -1.9
587,095 + AMB_RS02790 0.24 +0.4
587,096 - AMB_RS02790 0.24 -2.1
587,096 - AMB_RS02790 0.24 +0.4
587,096 - AMB_RS02790 0.24 -0.6
587,097 + AMB_RS02790 0.24 -0.9
587,098 - AMB_RS02790 0.25 -1.2
587,098 - AMB_RS02790 0.25 -1.7
587,098 - AMB_RS02790 0.25 -1.6
587,098 - AMB_RS02790 0.25 -1.6
587,098 - AMB_RS02790 0.25 -1.0
587,168 - AMB_RS02790 0.28 -3.1
587,197 + AMB_RS02790 0.29 -1.9
587,197 + AMB_RS02790 0.29 -0.2
587,200 + AMB_RS02790 0.29 +0.4
587,200 + AMB_RS02790 0.29 -0.5
587,200 + AMB_RS02790 0.29 -1.2
587,200 + AMB_RS02790 0.29 -1.2
587,201 - AMB_RS02790 0.29 -1.9
587,201 - AMB_RS02790 0.29 -0.2
587,239 + AMB_RS02790 0.31 +0.4
587,239 + AMB_RS02790 0.31 -2.9
587,240 - AMB_RS02790 0.31 -0.6
587,393 - AMB_RS02790 0.38 -0.6
587,435 - AMB_RS02790 0.40 -0.6
587,448 + AMB_RS02790 0.41 -1.0
587,448 + AMB_RS02790 0.41 -0.0
587,448 + AMB_RS02790 0.41 -1.2
587,650 - AMB_RS02790 0.50 -2.2
587,650 - AMB_RS02790 0.50 -2.3
587,650 - AMB_RS02790 0.50 +0.4
587,733 + AMB_RS02790 0.54 -0.5
587,733 + AMB_RS02790 0.54 -1.6
587,791 + AMB_RS02790 0.57 -0.6
587,791 + AMB_RS02790 0.57 +0.4
587,791 + AMB_RS02790 0.57 -0.6
587,791 + AMB_RS02790 0.57 -0.2
587,926 + AMB_RS02790 0.63 -1.2
587,965 + AMB_RS02790 0.65 +0.4
587,965 + AMB_RS02790 0.65 +0.4
587,965 + AMB_RS02790 0.65 -1.0
587,966 - AMB_RS02790 0.65 +0.4
587,966 - AMB_RS02790 0.65 +0.4
588,028 + AMB_RS02790 0.68 +0.4
588,029 - AMB_RS02790 0.68 -0.6
588,029 - AMB_RS02790 0.68 +0.4
588,066 + AMB_RS02790 0.70 -1.2
588,066 + AMB_RS02790 0.70 +0.4
588,067 - AMB_RS02790 0.70 -3.0
588,067 - AMB_RS02790 0.70 -1.6
588,075 + AMB_RS02790 0.70 +0.4
588,075 + AMB_RS02790 0.70 -1.9
588,076 - AMB_RS02790 0.71 +0.4
588,134 - AMB_RS02790 0.73 -1.2
588,134 - AMB_RS02790 0.73 +0.4
588,142 + AMB_RS02790 0.74 -2.5
588,142 + AMB_RS02790 0.74 +0.4
588,142 + AMB_RS02790 0.74 -1.1
588,142 + AMB_RS02790 0.74 -3.2
588,142 + AMB_RS02790 0.74 -0.6
588,143 - AMB_RS02790 0.74 +0.4
588,154 + AMB_RS02790 0.74 -0.4
588,154 + AMB_RS02790 0.74 -0.0
588,154 + AMB_RS02790 0.74 -1.2
588,154 + AMB_RS02790 0.74 -0.8
588,154 + AMB_RS02790 0.74 -0.1
588,154 + AMB_RS02790 0.74 -0.3
588,155 - AMB_RS02790 0.74 -0.2
588,156 + AMB_RS02790 0.74 +0.4
588,177 + AMB_RS02790 0.75 -0.6
588,361 + AMB_RS02790 0.84 -0.6
588,361 + AMB_RS02790 0.84 +0.4
588,361 + AMB_RS02790 0.84 +0.4
588,361 + AMB_RS02790 0.84 -1.2
588,361 + AMB_RS02790 0.84 -1.2
588,361 + AMB_RS02790 0.84 -0.4
588,361 + AMB_RS02790 0.84 -1.6
588,362 - AMB_RS02790 0.84 -1.2
588,362 - AMB_RS02790 0.84 -0.6
588,362 - AMB_RS02790 0.84 +0.4
588,362 - AMB_RS02790 0.84 -3.3
588,362 - AMB_RS02790 0.84 +0.4
588,362 - AMB_RS02790 0.84 +1.4
588,362 - AMB_RS02790 0.84 -3.2
588,362 - AMB_RS02790 0.84 -1.6
588,523 + -1.6
588,580 + +0.4
588,581 - -0.2
588,583 + -0.6
588,583 + +0.4
588,583 + +0.4
588,583 + +0.4
588,583 + -1.2
588,584 - -2.7
588,584 - -0.6
588,584 - -1.6
588,608 - -0.1
588,743 + -0.6
588,744 - +0.4
589,353 - -1.2
589,353 - -0.3

Or see this region's nucleotide sequence