Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02525

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02520 and AMB_RS02525 are separated by 111 nucleotidesAMB_RS02525 and AMB_RS02530 are separated by 136 nucleotides AMB_RS02520: AMB_RS02520 - hypothetical protein, at 521,131 to 522,141 _RS02520 AMB_RS02525: AMB_RS02525 - U32 family peptidase, at 522,253 to 523,158 _RS02525 AMB_RS02530: AMB_RS02530 - U32 family peptidase, at 523,295 to 524,326 _RS02530 Position (kb) 522 523 524Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 521.282 kb on - strand, within AMB_RS02520at 521.357 kb on + strand, within AMB_RS02520at 521.357 kb on + strand, within AMB_RS02520at 521.358 kb on - strand, within AMB_RS02520at 521.358 kb on - strand, within AMB_RS02520at 521.429 kb on + strand, within AMB_RS02520at 521.429 kb on + strand, within AMB_RS02520at 521.429 kb on + strand, within AMB_RS02520at 521.430 kb on - strand, within AMB_RS02520at 521.510 kb on + strand, within AMB_RS02520at 521.510 kb on + strand, within AMB_RS02520at 521.510 kb on + strand, within AMB_RS02520at 521.511 kb on - strand, within AMB_RS02520at 521.511 kb on - strand, within AMB_RS02520at 521.511 kb on - strand, within AMB_RS02520at 521.583 kb on + strand, within AMB_RS02520at 521.585 kb on + strand, within AMB_RS02520at 521.586 kb on - strand, within AMB_RS02520at 521.615 kb on + strand, within AMB_RS02520at 521.615 kb on + strand, within AMB_RS02520at 521.798 kb on + strand, within AMB_RS02520at 521.798 kb on + strand, within AMB_RS02520at 521.799 kb on - strand, within AMB_RS02520at 521.799 kb on - strand, within AMB_RS02520at 522.050 kb on + strandat 522.050 kb on + strandat 522.051 kb on - strandat 522.219 kb on + strandat 522.219 kb on + strandat 522.219 kb on + strandat 522.219 kb on + strandat 522.219 kb on + strandat 522.219 kb on + strandat 522.219 kb on + strandat 522.299 kb on + strandat 522.299 kb on + strandat 522.300 kb on - strandat 522.300 kb on - strandat 522.300 kb on - strandat 522.300 kb on - strandat 522.300 kb on - strandat 522.497 kb on + strand, within AMB_RS02525at 522.497 kb on + strand, within AMB_RS02525at 522.498 kb on - strand, within AMB_RS02525at 522.498 kb on - strand, within AMB_RS02525at 522.588 kb on - strand, within AMB_RS02525at 522.674 kb on - strand, within AMB_RS02525at 522.674 kb on - strand, within AMB_RS02525at 522.674 kb on - strand, within AMB_RS02525at 522.674 kb on - strand, within AMB_RS02525at 522.674 kb on - strand, within AMB_RS02525at 522.794 kb on + strand, within AMB_RS02525at 522.794 kb on + strand, within AMB_RS02525at 522.794 kb on + strand, within AMB_RS02525at 522.794 kb on + strand, within AMB_RS02525at 522.795 kb on - strand, within AMB_RS02525at 522.795 kb on - strand, within AMB_RS02525at 522.795 kb on - strand, within AMB_RS02525at 522.795 kb on - strand, within AMB_RS02525at 522.892 kb on + strand, within AMB_RS02525at 522.893 kb on - strand, within AMB_RS02525at 523.085 kb on + strandat 523.085 kb on + strandat 523.223 kb on + strandat 523.434 kb on + strand, within AMB_RS02530at 523.434 kb on + strand, within AMB_RS02530at 523.434 kb on + strand, within AMB_RS02530at 523.435 kb on - strand, within AMB_RS02530at 523.435 kb on - strand, within AMB_RS02530at 523.542 kb on + strand, within AMB_RS02530at 523.542 kb on + strand, within AMB_RS02530at 523.542 kb on + strand, within AMB_RS02530at 523.543 kb on - strand, within AMB_RS02530at 523.543 kb on - strand, within AMB_RS02530at 523.543 kb on - strand, within AMB_RS02530at 523.543 kb on - strand, within AMB_RS02530at 523.543 kb on - strand, within AMB_RS02530at 523.543 kb on - strand, within AMB_RS02530at 523.731 kb on + strand, within AMB_RS02530at 523.731 kb on + strand, within AMB_RS02530at 523.732 kb on - strand, within AMB_RS02530at 523.732 kb on - strand, within AMB_RS02530at 523.732 kb on - strand, within AMB_RS02530at 523.890 kb on + strand, within AMB_RS02530at 523.891 kb on - strand, within AMB_RS02530at 524.118 kb on + strand, within AMB_RS02530at 524.118 kb on + strand, within AMB_RS02530

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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521,282 - AMB_RS02520 0.15 +1.4
521,357 + AMB_RS02520 0.22 -3.7
521,357 + AMB_RS02520 0.22 -2.6
521,358 - AMB_RS02520 0.22 -0.3
521,358 - AMB_RS02520 0.22 -1.9
521,429 + AMB_RS02520 0.29 -2.6
521,429 + AMB_RS02520 0.29 -3.2
521,429 + AMB_RS02520 0.29 -0.1
521,430 - AMB_RS02520 0.30 +0.4
521,510 + AMB_RS02520 0.37 -2.9
521,510 + AMB_RS02520 0.37 -1.6
521,510 + AMB_RS02520 0.37 -0.3
521,511 - AMB_RS02520 0.38 -1.2
521,511 - AMB_RS02520 0.38 +0.4
521,511 - AMB_RS02520 0.38 +0.4
521,583 + AMB_RS02520 0.45 -0.6
521,585 + AMB_RS02520 0.45 -0.6
521,586 - AMB_RS02520 0.45 -0.6
521,615 + AMB_RS02520 0.48 -2.2
521,615 + AMB_RS02520 0.48 -3.3
521,798 + AMB_RS02520 0.66 -0.3
521,798 + AMB_RS02520 0.66 -1.4
521,799 - AMB_RS02520 0.66 -1.2
521,799 - AMB_RS02520 0.66 -1.6
522,050 + +0.6
522,050 + +0.4
522,051 - -0.6
522,219 + -2.2
522,219 + -0.5
522,219 + -3.1
522,219 + +0.4
522,219 + +0.4
522,219 + -1.9
522,219 + -1.6
522,299 + -2.8
522,299 + -1.9
522,300 - -4.1
522,300 - -0.6
522,300 - -4.3
522,300 - +0.4
522,300 - -3.6
522,497 + AMB_RS02525 0.27 -1.2
522,497 + AMB_RS02525 0.27 -1.9
522,498 - AMB_RS02525 0.27 -0.6
522,498 - AMB_RS02525 0.27 -2.2
522,588 - AMB_RS02525 0.37 -1.2
522,674 - AMB_RS02525 0.46 -4.1
522,674 - AMB_RS02525 0.46 -1.9
522,674 - AMB_RS02525 0.46 -0.6
522,674 - AMB_RS02525 0.46 -1.9
522,674 - AMB_RS02525 0.46 -0.6
522,794 + AMB_RS02525 0.60 -2.1
522,794 + AMB_RS02525 0.60 -2.6
522,794 + AMB_RS02525 0.60 -2.2
522,794 + AMB_RS02525 0.60 -4.9
522,795 - AMB_RS02525 0.60 -1.7
522,795 - AMB_RS02525 0.60 -2.8
522,795 - AMB_RS02525 0.60 -0.2
522,795 - AMB_RS02525 0.60 -5.3
522,892 + AMB_RS02525 0.71 -2.4
522,893 - AMB_RS02525 0.71 -1.2
523,085 + -2.5
523,085 + -0.6
523,223 + +0.4
523,434 + AMB_RS02530 0.13 -4.8
523,434 + AMB_RS02530 0.13 -1.6
523,434 + AMB_RS02530 0.13 -1.2
523,435 - AMB_RS02530 0.14 +0.4
523,435 - AMB_RS02530 0.14 -0.6
523,542 + AMB_RS02530 0.24 -0.6
523,542 + AMB_RS02530 0.24 +0.4
523,542 + AMB_RS02530 0.24 +0.4
523,543 - AMB_RS02530 0.24 -1.2
523,543 - AMB_RS02530 0.24 -5.9
523,543 - AMB_RS02530 0.24 -2.2
523,543 - AMB_RS02530 0.24 +0.4
523,543 - AMB_RS02530 0.24 +0.4
523,543 - AMB_RS02530 0.24 -1.2
523,731 + AMB_RS02530 0.42 +0.4
523,731 + AMB_RS02530 0.42 -1.2
523,732 - AMB_RS02530 0.42 -1.6
523,732 - AMB_RS02530 0.42 -2.6
523,732 - AMB_RS02530 0.42 -1.6
523,890 + AMB_RS02530 0.58 -3.9
523,891 - AMB_RS02530 0.58 -2.8
524,118 + AMB_RS02530 0.80 -1.6
524,118 + AMB_RS02530 0.80 +0.4

Or see this region's nucleotide sequence