Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02390 and AMB_RS02395 are separated by 113 nucleotides AMB_RS02395 and AMB_RS02400 are separated by 145 nucleotides AMB_RS02400 and AMB_RS02405 overlap by 8 nucleotides AMB_RS02405 and AMB_RS02410 are separated by 7 nucleotides AMB_RS02410 and AMB_RS02415 overlap by 8 nucleotides AMB_RS02415 and AMB_RS02420 are separated by 27 nucleotides
AMB_RS02390: AMB_RS02390 - hypothetical protein, at 500,874 to 501,251
_RS02390
AMB_RS02395: AMB_RS02395 - hypothetical protein, at 501,365 to 501,817
_RS02395
AMB_RS02400: AMB_RS02400 - hypothetical protein, at 501,963 to 502,511
_RS02400
AMB_RS02405: AMB_RS02405 - hypothetical protein, at 502,504 to 502,902
_RS02405
AMB_RS02410: AMB_RS02410 - hypothetical protein, at 502,910 to 503,128
_RS02410
AMB_RS02415: AMB_RS02415 - DnaK suppressor protein, at 503,121 to 503,345
_RS02415
AMB_RS02420: AMB_RS02420 - hypothetical protein, at 503,373 to 503,768
_RS02420
Position (kb) 501
502
503 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 500.979 kb on + strand, within AMB_RS02390 at 500.979 kb on + strand, within AMB_RS02390 at 500.979 kb on + strand, within AMB_RS02390 at 500.979 kb on + strand, within AMB_RS02390 at 500.979 kb on + strand, within AMB_RS02390 at 500.980 kb on - strand, within AMB_RS02390 at 500.980 kb on - strand, within AMB_RS02390 at 500.980 kb on - strand, within AMB_RS02390 at 500.980 kb on - strand, within AMB_RS02390 at 500.980 kb on - strand, within AMB_RS02390 at 500.980 kb on - strand, within AMB_RS02390 at 500.980 kb on - strand, within AMB_RS02390 at 501.013 kb on + strand, within AMB_RS02390 at 501.143 kb on + strand, within AMB_RS02390 at 501.186 kb on + strand, within AMB_RS02390 at 501.186 kb on + strand, within AMB_RS02390 at 501.186 kb on + strand, within AMB_RS02390 at 501.187 kb on - strand, within AMB_RS02390 at 501.187 kb on - strand, within AMB_RS02390 at 501.311 kb on + strand at 501.311 kb on + strand at 501.311 kb on + strand at 501.311 kb on + strand at 501.311 kb on + strand at 501.311 kb on + strand at 501.312 kb on - strand at 501.312 kb on - strand at 501.312 kb on - strand at 501.328 kb on + strand at 501.328 kb on + strand at 501.540 kb on - strand, within AMB_RS02395 at 501.540 kb on - strand, within AMB_RS02395 at 501.540 kb on - strand, within AMB_RS02395 at 501.540 kb on - strand, within AMB_RS02395 at 501.540 kb on - strand, within AMB_RS02395 at 501.617 kb on + strand, within AMB_RS02395 at 501.631 kb on - strand, within AMB_RS02395 at 502.509 kb on + strand at 502.509 kb on + strand at 502.888 kb on + strand at 502.889 kb on - strand at 502.889 kb on - strand at 502.889 kb on - strand at 503.224 kb on - strand, within AMB_RS02415 at 503.224 kb on - strand, within AMB_RS02415 at 503.370 kb on + strand at 503.370 kb on + strand at 503.370 kb on + strand at 503.370 kb on + strand at 503.370 kb on + strand at 503.370 kb on + strand at 503.370 kb on + strand at 503.370 kb on + strand at 503.371 kb on - strand at 503.371 kb on - strand at 503.371 kb on - strand at 503.371 kb on - strand at 503.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 500,979 + AMB_RS02390 0.28 -1.2 500,979 + AMB_RS02390 0.28 -0.6 500,979 + AMB_RS02390 0.28 -2.4 500,979 + AMB_RS02390 0.28 -1.2 500,979 + AMB_RS02390 0.28 -0.6 500,980 - AMB_RS02390 0.28 +0.4 500,980 - AMB_RS02390 0.28 -2.2 500,980 - AMB_RS02390 0.28 +0.0 500,980 - AMB_RS02390 0.28 +0.4 500,980 - AMB_RS02390 0.28 -1.2 500,980 - AMB_RS02390 0.28 +0.2 500,980 - AMB_RS02390 0.28 -1.2 501,013 + AMB_RS02390 0.37 +0.4 501,143 + AMB_RS02390 0.71 -1.2 501,186 + AMB_RS02390 0.83 -2.2 501,186 + AMB_RS02390 0.83 +0.4 501,186 + AMB_RS02390 0.83 +0.4 501,187 - AMB_RS02390 0.83 -2.4 501,187 - AMB_RS02390 0.83 +0.4 501,311 + +0.4 501,311 + -2.2 501,311 + -0.6 501,311 + -2.2 501,311 + -0.6 501,311 + -1.2 501,312 - -3.1 501,312 - -2.6 501,312 - -0.6 501,328 + -0.6 501,328 + -0.0 501,540 - AMB_RS02395 0.39 +0.4 501,540 - AMB_RS02395 0.39 -1.9 501,540 - AMB_RS02395 0.39 -0.6 501,540 - AMB_RS02395 0.39 -2.2 501,540 - AMB_RS02395 0.39 -1.9 501,617 + AMB_RS02395 0.56 -1.6 501,631 - AMB_RS02395 0.59 -2.9 502,509 + -2.6 502,509 + +0.4 502,888 + +0.4 502,889 - -1.6 502,889 - +0.4 502,889 - -1.6 503,224 - AMB_RS02415 0.46 -1.2 503,224 - AMB_RS02415 0.46 +0.4 503,370 + +0.4 503,370 + +0.4 503,370 + -2.2 503,370 + +1.4 503,370 + -0.3 503,370 + -1.2 503,370 + +0.4 503,370 + +0.4 503,371 - +0.4 503,371 - +0.4 503,371 - -1.9 503,371 - -0.7 503,371 - +0.4
Or see this region's nucleotide sequence