Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02240 and AMB_RS02245 are separated by 23 nucleotides AMB_RS02245 and AMB_RS02250 are separated by 148 nucleotides
AMB_RS02240: AMB_RS02240 - surface lipoprotein, at 474,793 to 475,605
_RS02240
AMB_RS02245: AMB_RS02245 - ABC transporter, at 475,629 to 476,270
_RS02245
AMB_RS02250: AMB_RS02250 - hypothetical protein, at 476,419 to 480,750
_RS02250
Position (kb) 475
476
477 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 474.696 kb on + strand at 474.769 kb on + strand at 474.769 kb on + strand at 474.774 kb on + strand at 475.465 kb on + strand, within AMB_RS02240 at 475.465 kb on + strand, within AMB_RS02240 at 475.465 kb on + strand, within AMB_RS02240 at 475.613 kb on + strand at 475.613 kb on + strand at 475.613 kb on + strand at 475.613 kb on + strand at 475.613 kb on + strand at 475.613 kb on + strand at 475.613 kb on + strand at 476.303 kb on - strand at 476.420 kb on + strand at 476.420 kb on + strand at 476.420 kb on + strand at 476.421 kb on - strand at 476.431 kb on + strand at 476.431 kb on + strand at 476.431 kb on + strand at 476.432 kb on - strand at 476.432 kb on - strand at 476.432 kb on - strand at 476.432 kb on - strand at 476.667 kb on + strand at 476.888 kb on + strand, within AMB_RS02250 at 476.889 kb on - strand, within AMB_RS02250 at 476.889 kb on - strand, within AMB_RS02250 at 476.955 kb on + strand, within AMB_RS02250 at 476.956 kb on - strand, within AMB_RS02250 at 476.988 kb on + strand, within AMB_RS02250 at 477.259 kb on + strand, within AMB_RS02250
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 474,696 + -0.6 474,769 + -2.2 474,769 + -1.9 474,774 + -0.6 475,465 + AMB_RS02240 0.83 -0.6 475,465 + AMB_RS02240 0.83 -2.2 475,465 + AMB_RS02240 0.83 -1.2 475,613 + -0.6 475,613 + +0.4 475,613 + -0.6 475,613 + -1.2 475,613 + -2.4 475,613 + -1.9 475,613 + -1.9 476,303 - -1.6 476,420 + -0.6 476,420 + -2.6 476,420 + +0.2 476,421 - -1.2 476,431 + -2.9 476,431 + +0.4 476,431 + -0.6 476,432 - -2.2 476,432 - -1.9 476,432 - -1.6 476,432 - -2.6 476,667 + +0.4 476,888 + AMB_RS02250 0.11 -1.2 476,889 - AMB_RS02250 0.11 -0.6 476,889 - AMB_RS02250 0.11 -3.2 476,955 + AMB_RS02250 0.12 +0.4 476,956 - AMB_RS02250 0.12 -1.2 476,988 + AMB_RS02250 0.13 -0.6 477,259 + AMB_RS02250 0.19 -0.0
Or see this region's nucleotide sequence