Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02230

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02225 and AMB_RS02230 are separated by 85 nucleotidesAMB_RS02230 and AMB_RS02235 overlap by 4 nucleotides AMB_RS02225: AMB_RS02225 - methionine synthase, at 469,104 to 472,577 _RS02225 AMB_RS02230: AMB_RS02230 - methylenetetrahydrofolate reductase, at 472,663 to 473,559 _RS02230 AMB_RS02235: AMB_RS02235 - methyltransferase domain-containing protein, at 473,556 to 474,515 _RS02235 Position (kb) 472 473 474Strain fitness (log2 ratio) -1 0 1at 472.665 kb on - strandat 473.840 kb on - strand, within AMB_RS02235at 473.845 kb on - strand, within AMB_RS02235at 473.845 kb on - strand, within AMB_RS02235at 473.845 kb on - strand, within AMB_RS02235at 473.845 kb on - strand, within AMB_RS02235at 473.845 kb on - strand, within AMB_RS02235at 473.845 kb on - strand, within AMB_RS02235at 473.845 kb on - strand, within AMB_RS02235at 474.173 kb on - strand, within AMB_RS02235at 474.314 kb on - strand, within AMB_RS02235at 474.314 kb on - strand, within AMB_RS02235at 474.314 kb on - strand, within AMB_RS02235at 474.314 kb on - strand, within AMB_RS02235

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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472,665 - +0.4
473,840 - AMB_RS02235 0.30 -0.6
473,845 - AMB_RS02235 0.30 -0.6
473,845 - AMB_RS02235 0.30 -1.2
473,845 - AMB_RS02235 0.30 +0.4
473,845 - AMB_RS02235 0.30 +0.4
473,845 - AMB_RS02235 0.30 -0.6
473,845 - AMB_RS02235 0.30 -0.6
473,845 - AMB_RS02235 0.30 -1.2
474,173 - AMB_RS02235 0.64 +0.4
474,314 - AMB_RS02235 0.79 -1.2
474,314 - AMB_RS02235 0.79 +0.4
474,314 - AMB_RS02235 0.79 -0.9
474,314 - AMB_RS02235 0.79 -0.6

Or see this region's nucleotide sequence