Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02130

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23870 and AMB_RS02130 are separated by 446 nucleotidesAMB_RS02130 and AMB_RS02135 are separated by 266 nucleotides AMB_RS23870: AMB_RS23870 - ParA family protein, at 448,228 to 448,884 _RS23870 AMB_RS02130: AMB_RS02130 - hypothetical protein, at 449,331 to 449,561 _RS02130 AMB_RS02135: AMB_RS02135 - acyltransferase, at 449,828 to 450,922 _RS02135 Position (kb) 449 450Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 448.335 kb on - strand, within AMB_RS23870at 448.335 kb on - strand, within AMB_RS23870at 448.335 kb on - strand, within AMB_RS23870at 448.335 kb on - strand, within AMB_RS23870at 448.465 kb on + strand, within AMB_RS23870at 448.485 kb on + strand, within AMB_RS23870at 448.485 kb on + strand, within AMB_RS23870at 448.485 kb on + strand, within AMB_RS23870at 448.485 kb on + strand, within AMB_RS23870at 448.508 kb on + strand, within AMB_RS23870at 448.526 kb on - strand, within AMB_RS23870at 448.545 kb on - strand, within AMB_RS23870at 448.545 kb on - strand, within AMB_RS23870at 448.557 kb on - strand, within AMB_RS23870at 448.557 kb on - strand, within AMB_RS23870at 448.629 kb on + strand, within AMB_RS23870at 448.641 kb on - strand, within AMB_RS23870at 448.641 kb on - strand, within AMB_RS23870at 448.709 kb on + strand, within AMB_RS23870at 448.709 kb on + strand, within AMB_RS23870at 448.729 kb on + strand, within AMB_RS23870at 448.729 kb on + strand, within AMB_RS23870at 448.729 kb on + strand, within AMB_RS23870at 448.729 kb on + strand, within AMB_RS23870at 448.730 kb on - strand, within AMB_RS23870at 448.730 kb on - strand, within AMB_RS23870at 448.730 kb on - strand, within AMB_RS23870at 448.760 kb on - strand, within AMB_RS23870at 448.760 kb on - strand, within AMB_RS23870at 448.773 kb on + strand, within AMB_RS23870at 448.851 kb on + strandat 448.854 kb on + strandat 448.855 kb on - strandat 448.862 kb on + strandat 448.862 kb on + strandat 448.862 kb on + strandat 448.863 kb on - strandat 448.867 kb on - strandat 449.057 kb on + strandat 449.057 kb on + strandat 449.057 kb on + strandat 449.058 kb on - strandat 449.058 kb on - strandat 449.058 kb on - strandat 449.155 kb on - strandat 449.176 kb on - strandat 449.540 kb on + strandat 449.553 kb on - strandat 449.567 kb on - strandat 449.570 kb on - strandat 449.934 kb on - strandat 449.937 kb on + strandat 449.937 kb on + strandat 449.937 kb on + strandat 449.938 kb on - strand, within AMB_RS02135at 449.938 kb on - strand, within AMB_RS02135at 449.951 kb on + strand, within AMB_RS02135at 449.951 kb on + strand, within AMB_RS02135at 449.951 kb on + strand, within AMB_RS02135at 449.951 kb on + strand, within AMB_RS02135at 449.952 kb on - strand, within AMB_RS02135at 449.952 kb on - strand, within AMB_RS02135at 449.952 kb on - strand, within AMB_RS02135at 449.979 kb on - strand, within AMB_RS02135at 449.979 kb on - strand, within AMB_RS02135at 450.036 kb on - strand, within AMB_RS02135at 450.123 kb on + strand, within AMB_RS02135at 450.139 kb on - strand, within AMB_RS02135at 450.139 kb on - strand, within AMB_RS02135at 450.139 kb on - strand, within AMB_RS02135at 450.139 kb on - strand, within AMB_RS02135at 450.152 kb on + strand, within AMB_RS02135at 450.152 kb on + strand, within AMB_RS02135at 450.153 kb on - strand, within AMB_RS02135at 450.155 kb on + strand, within AMB_RS02135at 450.155 kb on + strand, within AMB_RS02135at 450.156 kb on - strand, within AMB_RS02135at 450.156 kb on - strand, within AMB_RS02135at 450.156 kb on - strand, within AMB_RS02135at 450.156 kb on - strand, within AMB_RS02135at 450.169 kb on + strand, within AMB_RS02135at 450.199 kb on - strand, within AMB_RS02135at 450.199 kb on - strand, within AMB_RS02135at 450.206 kb on + strand, within AMB_RS02135at 450.206 kb on + strand, within AMB_RS02135at 450.207 kb on - strand, within AMB_RS02135at 450.207 kb on - strand, within AMB_RS02135at 450.207 kb on - strand, within AMB_RS02135at 450.270 kb on - strand, within AMB_RS02135at 450.323 kb on + strand, within AMB_RS02135at 450.324 kb on - strand, within AMB_RS02135at 450.389 kb on + strand, within AMB_RS02135at 450.389 kb on + strand, within AMB_RS02135at 450.390 kb on - strand, within AMB_RS02135at 450.390 kb on - strand, within AMB_RS02135at 450.390 kb on - strand, within AMB_RS02135at 450.443 kb on + strand, within AMB_RS02135

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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448,335 - AMB_RS23870 0.16 -2.2
448,335 - AMB_RS23870 0.16 -1.9
448,335 - AMB_RS23870 0.16 -4.2
448,335 - AMB_RS23870 0.16 -0.6
448,465 + AMB_RS23870 0.36 -0.0
448,485 + AMB_RS23870 0.39 +0.4
448,485 + AMB_RS23870 0.39 -0.6
448,485 + AMB_RS23870 0.39 -1.6
448,485 + AMB_RS23870 0.39 -0.7
448,508 + AMB_RS23870 0.43 -0.6
448,526 - AMB_RS23870 0.45 -1.2
448,545 - AMB_RS23870 0.48 -0.6
448,545 - AMB_RS23870 0.48 -1.6
448,557 - AMB_RS23870 0.50 -1.6
448,557 - AMB_RS23870 0.50 -0.9
448,629 + AMB_RS23870 0.61 +0.4
448,641 - AMB_RS23870 0.63 +0.4
448,641 - AMB_RS23870 0.63 +0.4
448,709 + AMB_RS23870 0.73 -2.2
448,709 + AMB_RS23870 0.73 -1.9
448,729 + AMB_RS23870 0.76 -1.6
448,729 + AMB_RS23870 0.76 -1.9
448,729 + AMB_RS23870 0.76 -0.6
448,729 + AMB_RS23870 0.76 -1.2
448,730 - AMB_RS23870 0.76 -0.6
448,730 - AMB_RS23870 0.76 -0.6
448,730 - AMB_RS23870 0.76 -1.2
448,760 - AMB_RS23870 0.81 -1.6
448,760 - AMB_RS23870 0.81 -0.6
448,773 + AMB_RS23870 0.83 -0.6
448,851 + -2.4
448,854 + +1.4
448,855 - -1.6
448,862 + -0.6
448,862 + -1.2
448,862 + -0.6
448,863 - -0.7
448,867 - -0.6
449,057 + -1.6
449,057 + +0.4
449,057 + +0.1
449,058 - +0.4
449,058 - -1.9
449,058 - -1.2
449,155 - +0.4
449,176 - -0.1
449,540 + -0.4
449,553 - -0.6
449,567 - -0.6
449,570 - +0.4
449,934 - +0.1
449,937 + -0.6
449,937 + +0.4
449,937 + +0.4
449,938 - AMB_RS02135 0.10 -1.9
449,938 - AMB_RS02135 0.10 -2.6
449,951 + AMB_RS02135 0.11 -1.2
449,951 + AMB_RS02135 0.11 +0.4
449,951 + AMB_RS02135 0.11 -1.6
449,951 + AMB_RS02135 0.11 +0.4
449,952 - AMB_RS02135 0.11 +0.4
449,952 - AMB_RS02135 0.11 -1.6
449,952 - AMB_RS02135 0.11 -1.2
449,979 - AMB_RS02135 0.14 -0.6
449,979 - AMB_RS02135 0.14 +0.4
450,036 - AMB_RS02135 0.19 -3.2
450,123 + AMB_RS02135 0.27 -0.2
450,139 - AMB_RS02135 0.28 -0.6
450,139 - AMB_RS02135 0.28 -1.6
450,139 - AMB_RS02135 0.28 -1.9
450,139 - AMB_RS02135 0.28 -2.4
450,152 + AMB_RS02135 0.30 -2.2
450,152 + AMB_RS02135 0.30 -0.6
450,153 - AMB_RS02135 0.30 -3.2
450,155 + AMB_RS02135 0.30 -2.2
450,155 + AMB_RS02135 0.30 -2.2
450,156 - AMB_RS02135 0.30 +0.4
450,156 - AMB_RS02135 0.30 -1.2
450,156 - AMB_RS02135 0.30 +1.1
450,156 - AMB_RS02135 0.30 +0.4
450,169 + AMB_RS02135 0.31 +0.4
450,199 - AMB_RS02135 0.34 -2.4
450,199 - AMB_RS02135 0.34 -1.6
450,206 + AMB_RS02135 0.35 +0.4
450,206 + AMB_RS02135 0.35 -2.2
450,207 - AMB_RS02135 0.35 -1.2
450,207 - AMB_RS02135 0.35 -0.4
450,207 - AMB_RS02135 0.35 -1.6
450,270 - AMB_RS02135 0.40 -1.6
450,323 + AMB_RS02135 0.45 +0.4
450,324 - AMB_RS02135 0.45 -1.9
450,389 + AMB_RS02135 0.51 -1.9
450,389 + AMB_RS02135 0.51 -0.1
450,390 - AMB_RS02135 0.51 -0.4
450,390 - AMB_RS02135 0.51 -2.6
450,390 - AMB_RS02135 0.51 +0.4
450,443 + AMB_RS02135 0.56 -1.2

Or see this region's nucleotide sequence