Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01955 and AMB_RS01960 overlap by 4 nucleotides AMB_RS01960 and AMB_RS01965 are separated by 6 nucleotides AMB_RS01965 and AMB_RS01970 are separated by 10 nucleotides
AMB_RS01955: AMB_RS01955 - replication protein, at 412,712 to 415,702
_RS01955
AMB_RS01960: AMB_RS01960 - hypothetical protein, at 415,699 to 416,196
_RS01960
AMB_RS01965: AMB_RS01965 - hypothetical protein, at 416,203 to 417,072
_RS01965
AMB_RS01970: AMB_RS01970 - hypothetical protein, at 417,083 to 417,493
_RS01970
Position (kb) 415
416
417 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 414.753 kb on - strand, within AMB_RS01955 at 414.797 kb on + strand, within AMB_RS01955 at 414.879 kb on - strand, within AMB_RS01955 at 414.879 kb on - strand, within AMB_RS01955 at 414.879 kb on - strand, within AMB_RS01955 at 414.879 kb on - strand, within AMB_RS01955 at 414.879 kb on - strand, within AMB_RS01955 at 414.965 kb on + strand, within AMB_RS01955 at 415.098 kb on + strand, within AMB_RS01955 at 415.171 kb on + strand, within AMB_RS01955 at 415.331 kb on + strand, within AMB_RS01955 at 415.331 kb on + strand, within AMB_RS01955 at 415.332 kb on - strand, within AMB_RS01955 at 415.332 kb on - strand, within AMB_RS01955 at 415.332 kb on - strand, within AMB_RS01955 at 415.332 kb on - strand, within AMB_RS01955 at 415.332 kb on - strand, within AMB_RS01955 at 415.332 kb on - strand, within AMB_RS01955 at 415.332 kb on - strand, within AMB_RS01955 at 415.332 kb on - strand, within AMB_RS01955 at 415.447 kb on + strand at 415.694 kb on + strand at 415.745 kb on - strand at 415.745 kb on - strand at 415.753 kb on + strand, within AMB_RS01960 at 416.008 kb on + strand, within AMB_RS01960 at 416.008 kb on + strand, within AMB_RS01960 at 416.009 kb on - strand, within AMB_RS01960 at 416.155 kb on - strand at 416.155 kb on - strand at 416.155 kb on - strand at 416.155 kb on - strand at 416.350 kb on - strand, within AMB_RS01965 at 416.478 kb on + strand, within AMB_RS01965 at 416.479 kb on - strand, within AMB_RS01965 at 417.043 kb on + strand at 417.044 kb on - strand at 417.101 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 414,753 - AMB_RS01955 0.68 +0.4 414,797 + AMB_RS01955 0.70 -1.2 414,879 - AMB_RS01955 0.72 -3.1 414,879 - AMB_RS01955 0.72 -1.2 414,879 - AMB_RS01955 0.72 -2.0 414,879 - AMB_RS01955 0.72 -1.2 414,879 - AMB_RS01955 0.72 -0.9 414,965 + AMB_RS01955 0.75 -0.6 415,098 + AMB_RS01955 0.80 -1.6 415,171 + AMB_RS01955 0.82 -0.6 415,331 + AMB_RS01955 0.88 -1.2 415,331 + AMB_RS01955 0.88 -1.2 415,332 - AMB_RS01955 0.88 -2.0 415,332 - AMB_RS01955 0.88 -1.2 415,332 - AMB_RS01955 0.88 -1.1 415,332 - AMB_RS01955 0.88 -1.0 415,332 - AMB_RS01955 0.88 +0.4 415,332 - AMB_RS01955 0.88 -1.6 415,332 - AMB_RS01955 0.88 -0.6 415,332 - AMB_RS01955 0.88 -0.2 415,447 + -0.1 415,694 + +0.4 415,745 - -0.5 415,745 - -1.1 415,753 + AMB_RS01960 0.11 -1.2 416,008 + AMB_RS01960 0.62 -3.6 416,008 + AMB_RS01960 0.62 -2.8 416,009 - AMB_RS01960 0.62 -1.2 416,155 - -0.6 416,155 - -1.5 416,155 - -0.6 416,155 - -0.3 416,350 - AMB_RS01965 0.17 -1.6 416,478 + AMB_RS01965 0.32 +0.4 416,479 - AMB_RS01965 0.32 -0.6 417,043 + -1.2 417,044 - -0.3 417,101 + +0.4
Or see this region's nucleotide sequence