Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01720

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01710 and AMB_RS01715 overlap by 1 nucleotidesAMB_RS01715 and AMB_RS01720 are separated by 64 nucleotidesAMB_RS01720 and AMB_RS01725 are separated by 101 nucleotidesAMB_RS01725 and AMB_RS01730 are separated by 114 nucleotides AMB_RS01710: AMB_RS01710 - glycosyl transferase, at 375,583 to 376,782 _RS01710 AMB_RS01715: AMB_RS01715 - glycosyltransferase family 9 protein, at 376,782 to 377,711 _RS01715 AMB_RS01720: AMB_RS01720 - threonine--tRNA ligase, at 377,776 to 379,692 _RS01720 AMB_RS01725: AMB_RS01725 - translation initiation factor IF-3, at 379,794 to 380,315 _RS01725 AMB_RS01730: AMB_RS01730 - tRNA-Ser, at 380,430 to 380,519 _RS01730 Position (kb) 377 378 379 380Strain fitness (log2 ratio) -3 -2 -1 0 1at 377.730 kb on + strandat 379.754 kb on + strandat 380.313 kb on + strandat 380.313 kb on + strandat 380.314 kb on - strandat 380.339 kb on - strandat 380.381 kb on + strandat 380.381 kb on + strandat 380.551 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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377,730 + +0.3
379,754 + -3.2
380,313 + -2.0
380,313 + -2.0
380,314 - +0.3
380,339 - +0.3
380,381 + -0.2
380,381 + -0.7
380,551 - -1.7

Or see this region's nucleotide sequence