Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01685

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01675 and AMB_RS01680 overlap by 1 nucleotidesAMB_RS01680 and AMB_RS01685 are separated by 4 nucleotidesAMB_RS01685 and AMB_RS01690 overlap by 4 nucleotides AMB_RS01675: AMB_RS01675 - ABC transporter ATP-binding protein, at 370,277 to 371,104 _RS01675 AMB_RS01680: AMB_RS01680 - ABC transporter permease, at 371,104 to 371,919 _RS01680 AMB_RS01685: AMB_RS01685 - anti-sigma factor antagonist, at 371,924 to 372,250 _RS01685 AMB_RS01690: AMB_RS01690 - serine phosphatase, at 372,247 to 373,914 _RS01690 Position (kb) 371 372 373Strain fitness (log2 ratio) -3 -2 -1 0 1at 371.327 kb on + strand, within AMB_RS01680at 371.327 kb on + strand, within AMB_RS01680at 371.327 kb on + strand, within AMB_RS01680at 371.327 kb on + strand, within AMB_RS01680at 371.327 kb on + strand, within AMB_RS01680at 371.327 kb on + strand, within AMB_RS01680at 371.327 kb on + strand, within AMB_RS01680at 371.328 kb on - strand, within AMB_RS01680at 371.328 kb on - strand, within AMB_RS01680at 371.328 kb on - strand, within AMB_RS01680at 371.328 kb on - strand, within AMB_RS01680at 371.363 kb on + strand, within AMB_RS01680at 371.363 kb on + strand, within AMB_RS01680at 371.363 kb on + strand, within AMB_RS01680at 371.363 kb on + strand, within AMB_RS01680at 371.364 kb on - strand, within AMB_RS01680at 371.364 kb on - strand, within AMB_RS01680at 371.364 kb on - strand, within AMB_RS01680at 371.654 kb on + strand, within AMB_RS01680at 371.654 kb on + strand, within AMB_RS01680at 371.654 kb on + strand, within AMB_RS01680at 371.654 kb on + strand, within AMB_RS01680at 371.655 kb on - strand, within AMB_RS01680at 371.655 kb on - strand, within AMB_RS01680at 371.655 kb on - strand, within AMB_RS01680at 371.802 kb on - strand, within AMB_RS01680at 372.060 kb on + strand, within AMB_RS01685at 372.099 kb on + strand, within AMB_RS01685at 372.099 kb on + strand, within AMB_RS01685at 372.099 kb on + strand, within AMB_RS01685at 372.099 kb on + strand, within AMB_RS01685at 372.100 kb on - strand, within AMB_RS01685at 372.100 kb on - strand, within AMB_RS01685at 372.100 kb on - strand, within AMB_RS01685at 372.100 kb on - strand, within AMB_RS01685at 372.337 kb on + strandat 372.338 kb on - strandat 372.338 kb on - strandat 372.396 kb on + strandat 372.397 kb on - strandat 372.426 kb on + strand, within AMB_RS01690at 372.494 kb on + strand, within AMB_RS01690at 372.857 kb on + strand, within AMB_RS01690at 372.857 kb on + strand, within AMB_RS01690at 372.857 kb on + strand, within AMB_RS01690at 372.857 kb on + strand, within AMB_RS01690at 372.857 kb on + strand, within AMB_RS01690at 372.858 kb on - strand, within AMB_RS01690at 372.858 kb on - strand, within AMB_RS01690

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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371,327 + AMB_RS01680 0.27 -0.3
371,327 + AMB_RS01680 0.27 -0.7
371,327 + AMB_RS01680 0.27 -2.0
371,327 + AMB_RS01680 0.27 -2.7
371,327 + AMB_RS01680 0.27 -0.7
371,327 + AMB_RS01680 0.27 -0.7
371,327 + AMB_RS01680 0.27 -0.7
371,328 - AMB_RS01680 0.27 -1.8
371,328 - AMB_RS01680 0.27 +0.3
371,328 - AMB_RS01680 0.27 -1.3
371,328 - AMB_RS01680 0.27 -0.3
371,363 + AMB_RS01680 0.32 -0.7
371,363 + AMB_RS01680 0.32 +0.3
371,363 + AMB_RS01680 0.32 +0.0
371,363 + AMB_RS01680 0.32 -0.7
371,364 - AMB_RS01680 0.32 -2.0
371,364 - AMB_RS01680 0.32 -0.5
371,364 - AMB_RS01680 0.32 -1.8
371,654 + AMB_RS01680 0.67 -0.7
371,654 + AMB_RS01680 0.67 -0.7
371,654 + AMB_RS01680 0.67 -1.5
371,654 + AMB_RS01680 0.67 +0.3
371,655 - AMB_RS01680 0.68 -1.7
371,655 - AMB_RS01680 0.68 +0.3
371,655 - AMB_RS01680 0.68 +0.3
371,802 - AMB_RS01680 0.86 +0.3
372,060 + AMB_RS01685 0.42 -3.4
372,099 + AMB_RS01685 0.54 -1.5
372,099 + AMB_RS01685 0.54 +0.3
372,099 + AMB_RS01685 0.54 +0.3
372,099 + AMB_RS01685 0.54 -2.0
372,100 - AMB_RS01685 0.54 -0.7
372,100 - AMB_RS01685 0.54 -0.7
372,100 - AMB_RS01685 0.54 -0.8
372,100 - AMB_RS01685 0.54 -3.0
372,337 + -0.7
372,338 - -3.5
372,338 - -1.3
372,396 + -0.3
372,397 - -3.1
372,426 + AMB_RS01690 0.11 +0.0
372,494 + AMB_RS01690 0.15 +0.3
372,857 + AMB_RS01690 0.37 -2.5
372,857 + AMB_RS01690 0.37 -0.7
372,857 + AMB_RS01690 0.37 -0.7
372,857 + AMB_RS01690 0.37 -1.3
372,857 + AMB_RS01690 0.37 -1.3
372,858 - AMB_RS01690 0.37 +0.3
372,858 - AMB_RS01690 0.37 -1.7

Or see this region's nucleotide sequence