Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01490

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01485 and AMB_RS01490 overlap by 12 nucleotidesAMB_RS01490 and AMB_RS01495 are separated by 146 nucleotides AMB_RS01485: AMB_RS01485 - cobyric acid synthase, at 328,246 to 329,781 _RS01485 AMB_RS01490: AMB_RS01490 - cobalamin biosynthesis protein, at 329,770 to 330,765 _RS01490 AMB_RS01495: AMB_RS01495 - sirohydrochlorin chelatase, at 330,912 to 331,892 _RS01495 Position (kb) 329 330 331Strain fitness (log2 ratio) -3 -2 -1 0 1at 329.780 kb on - strandat 329.780 kb on - strandat 330.841 kb on + strandat 330.841 kb on + strandat 330.841 kb on + strandat 330.843 kb on + strandat 330.843 kb on + strandat 330.843 kb on + strandat 330.843 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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329,780 - -3.6
329,780 - -0.7
330,841 + +0.3
330,841 + -0.7
330,841 + +0.3
330,843 + -0.7
330,843 + +1.3
330,843 + -0.7
330,843 + -0.1

Or see this region's nucleotide sequence