Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01405 and AMB_RS01410 overlap by 4 nucleotides AMB_RS01410 and AMB_RS01415 overlap by 47 nucleotides AMB_RS01415 and AMB_RS01420 are separated by 107 nucleotides AMB_RS01420 and AMB_RS01425 are separated by 50 nucleotides
AMB_RS01405: AMB_RS01405 - cobalt ECF transporter T component CbiQ, at 308,171 to 308,905
_RS01405
AMB_RS01410: AMB_RS01410 - cobalt ABC transporter, at 308,902 to 309,696
_RS01410
AMB_RS01415: AMB_RS01415 - rhodanese-like domain-containing protein, at 309,650 to 310,153
_RS01415
AMB_RS01420: AMB_RS01420 - hypothetical protein, at 310,261 to 310,524
_RS01420
AMB_RS01425: AMB_RS01425 - bifunctional aldolase/short-chain dehydrogenase, at 310,575 to 312,614
_RS01425
Position (kb) 309
310
311 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 308.887 kb on - strand at 308.887 kb on - strand at 308.929 kb on + strand at 308.929 kb on + strand at 308.929 kb on + strand at 308.930 kb on - strand at 308.930 kb on - strand at 308.930 kb on - strand at 308.935 kb on + strand at 309.106 kb on + strand, within AMB_RS01410 at 309.107 kb on - strand, within AMB_RS01410 at 309.312 kb on + strand, within AMB_RS01410 at 309.312 kb on + strand, within AMB_RS01410 at 309.312 kb on + strand, within AMB_RS01410 at 309.312 kb on + strand, within AMB_RS01410 at 309.312 kb on + strand, within AMB_RS01410 at 309.312 kb on + strand, within AMB_RS01410 at 309.313 kb on - strand, within AMB_RS01410 at 309.313 kb on - strand, within AMB_RS01410 at 309.313 kb on - strand, within AMB_RS01410 at 309.578 kb on + strand, within AMB_RS01410 at 309.578 kb on + strand, within AMB_RS01410 at 309.691 kb on + strand at 310.054 kb on + strand, within AMB_RS01415 at 310.199 kb on - strand at 310.199 kb on - strand at 310.199 kb on - strand at 310.203 kb on + strand at 310.203 kb on + strand at 310.203 kb on + strand at 310.203 kb on + strand at 310.203 kb on + strand at 310.203 kb on + strand at 310.203 kb on + strand at 310.203 kb on + strand at 310.203 kb on + strand at 310.203 kb on + strand at 310.203 kb on + strand at 310.203 kb on + strand at 310.204 kb on - strand at 310.204 kb on - strand at 310.204 kb on - strand at 310.204 kb on - strand at 310.204 kb on - strand at 310.270 kb on - strand at 310.270 kb on - strand at 310.408 kb on + strand, within AMB_RS01420 at 310.408 kb on + strand, within AMB_RS01420 at 310.409 kb on - strand, within AMB_RS01420 at 310.428 kb on + strand, within AMB_RS01420 at 310.428 kb on + strand, within AMB_RS01420 at 310.428 kb on + strand, within AMB_RS01420 at 310.429 kb on - strand, within AMB_RS01420 at 310.429 kb on - strand, within AMB_RS01420 at 310.714 kb on + strand at 310.714 kb on + strand at 310.714 kb on + strand at 310.714 kb on + strand at 310.714 kb on + strand at 310.714 kb on + strand at 310.714 kb on + strand at 310.714 kb on + strand at 310.714 kb on + strand at 310.715 kb on - strand at 310.715 kb on - strand at 310.715 kb on - strand at 310.715 kb on - strand at 310.715 kb on - strand at 310.715 kb on - strand at 310.715 kb on - strand at 310.715 kb on - strand at 310.715 kb on - strand at 310.715 kb on - strand at 310.844 kb on - strand, within AMB_RS01425
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 308,887 - -1.3 308,887 - -1.3 308,929 + +0.3 308,929 + +0.3 308,929 + +0.3 308,930 - -1.7 308,930 - -1.7 308,930 - -0.5 308,935 + -3.1 309,106 + AMB_RS01410 0.26 -0.2 309,107 - AMB_RS01410 0.26 -0.7 309,312 + AMB_RS01410 0.52 -1.7 309,312 + AMB_RS01410 0.52 -0.2 309,312 + AMB_RS01410 0.52 -3.4 309,312 + AMB_RS01410 0.52 -4.0 309,312 + AMB_RS01410 0.52 -2.3 309,312 + AMB_RS01410 0.52 -0.1 309,313 - AMB_RS01410 0.52 +0.3 309,313 - AMB_RS01410 0.52 -2.3 309,313 - AMB_RS01410 0.52 -0.7 309,578 + AMB_RS01410 0.85 -0.7 309,578 + AMB_RS01410 0.85 -1.7 309,691 + -1.7 310,054 + AMB_RS01415 0.80 -0.7 310,199 - -1.3 310,199 - -1.7 310,199 - -0.7 310,203 + -2.0 310,203 + +0.3 310,203 + -1.7 310,203 + -0.7 310,203 + -0.7 310,203 + -1.5 310,203 + -1.3 310,203 + +0.3 310,203 + -1.0 310,203 + -0.3 310,203 + -2.0 310,203 + -0.7 310,204 - -1.3 310,204 - +0.3 310,204 - -0.2 310,204 - -0.6 310,204 - -4.5 310,270 - -0.7 310,270 - -0.0 310,408 + AMB_RS01420 0.56 -1.7 310,408 + AMB_RS01420 0.56 +0.3 310,409 - AMB_RS01420 0.56 -2.3 310,428 + AMB_RS01420 0.63 -2.8 310,428 + AMB_RS01420 0.63 -0.7 310,428 + AMB_RS01420 0.63 +0.3 310,429 - AMB_RS01420 0.64 +1.3 310,429 - AMB_RS01420 0.64 +0.3 310,714 + -1.7 310,714 + -0.7 310,714 + -0.4 310,714 + +0.3 310,714 + -3.3 310,714 + -0.2 310,714 + -1.7 310,714 + -2.0 310,714 + +0.3 310,715 - -2.0 310,715 - -2.0 310,715 - -1.3 310,715 - +0.3 310,715 - +0.3 310,715 - -1.3 310,715 - -0.1 310,715 - +0.3 310,715 - -3.4 310,715 - -0.7 310,844 - AMB_RS01425 0.13 -1.9
Or see this region's nucleotide sequence