Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01385 and AMB_RS01390 overlap by 11 nucleotides AMB_RS01390 and AMB_RS01395 are separated by 476 nucleotides
AMB_RS01385: AMB_RS01385 - HAMP domain-containing protein, at 304,480 to 306,093
_RS01385
AMB_RS01390: AMB_RS01390 - DNA-binding response regulator, at 306,083 to 306,778
_RS01390
AMB_RS01395: AMB_RS01395 - energy-coupling factor ABC transporter permease, at 307,255 to 307,905
_RS01395
Position (kb) 306
307 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 306.876 kb on - strand at 306.876 kb on - strand at 306.876 kb on - strand at 306.942 kb on + strand at 306.942 kb on + strand at 306.943 kb on - strand at 306.944 kb on + strand at 306.945 kb on - strand at 307.051 kb on + strand at 307.052 kb on - strand at 307.109 kb on + strand at 307.226 kb on - strand at 307.226 kb on - strand at 307.251 kb on + strand at 307.251 kb on + strand at 307.252 kb on - strand at 307.252 kb on - strand at 307.252 kb on - strand at 307.260 kb on + strand at 307.260 kb on + strand at 307.260 kb on + strand at 307.260 kb on + strand at 307.260 kb on + strand at 307.260 kb on + strand at 307.261 kb on - strand at 307.261 kb on - strand at 307.261 kb on - strand at 307.386 kb on + strand, within AMB_RS01395 at 307.624 kb on + strand, within AMB_RS01395 at 307.624 kb on + strand, within AMB_RS01395 at 307.625 kb on - strand, within AMB_RS01395 at 307.625 kb on - strand, within AMB_RS01395 at 307.711 kb on + strand, within AMB_RS01395 at 307.711 kb on + strand, within AMB_RS01395 at 307.711 kb on + strand, within AMB_RS01395 at 307.711 kb on + strand, within AMB_RS01395 at 307.711 kb on + strand, within AMB_RS01395 at 307.711 kb on + strand, within AMB_RS01395 at 307.711 kb on + strand, within AMB_RS01395 at 307.712 kb on - strand, within AMB_RS01395 at 307.712 kb on - strand, within AMB_RS01395 at 307.712 kb on - strand, within AMB_RS01395 at 307.712 kb on - strand, within AMB_RS01395 at 307.712 kb on - strand, within AMB_RS01395 at 307.712 kb on - strand, within AMB_RS01395 at 307.712 kb on - strand, within AMB_RS01395 at 307.712 kb on - strand, within AMB_RS01395
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 306,876 - -2.8 306,876 - -1.3 306,876 - -1.4 306,942 + +0.3 306,942 + +0.3 306,943 - -0.4 306,944 + -1.0 306,945 - +0.3 307,051 + -3.0 307,052 - +0.3 307,109 + +0.3 307,226 - -1.7 307,226 - -0.7 307,251 + -2.3 307,251 + -0.2 307,252 - +0.3 307,252 - +0.3 307,252 - -0.7 307,260 + -0.7 307,260 + +0.3 307,260 + -0.0 307,260 + -2.0 307,260 + -1.3 307,260 + -3.1 307,261 - +0.3 307,261 - -3.0 307,261 - +0.3 307,386 + AMB_RS01395 0.20 -0.7 307,624 + AMB_RS01395 0.57 -0.3 307,624 + AMB_RS01395 0.57 -0.7 307,625 - AMB_RS01395 0.57 -0.7 307,625 - AMB_RS01395 0.57 -2.3 307,711 + AMB_RS01395 0.70 -0.2 307,711 + AMB_RS01395 0.70 -0.7 307,711 + AMB_RS01395 0.70 -4.0 307,711 + AMB_RS01395 0.70 -1.7 307,711 + AMB_RS01395 0.70 -2.3 307,711 + AMB_RS01395 0.70 +0.3 307,711 + AMB_RS01395 0.70 +0.3 307,712 - AMB_RS01395 0.70 -2.7 307,712 - AMB_RS01395 0.70 -0.7 307,712 - AMB_RS01395 0.70 -2.0 307,712 - AMB_RS01395 0.70 -0.7 307,712 - AMB_RS01395 0.70 -0.6 307,712 - AMB_RS01395 0.70 -1.3 307,712 - AMB_RS01395 0.70 -2.5 307,712 - AMB_RS01395 0.70 -2.3
Or see this region's nucleotide sequence