Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00995 and AMB_RS01000 overlap by 14 nucleotides AMB_RS01000 and AMB_RS01005 are separated by 76 nucleotides AMB_RS01005 and AMB_RS01010 are separated by 55 nucleotides AMB_RS01010 and AMB_RS01015 are separated by 5 nucleotides AMB_RS01015 and AMB_RS01020 overlap by 1 nucleotides
AMB_RS00995: AMB_RS00995 - hypothetical protein, at 222,950 to 223,396
_RS00995
AMB_RS01000: AMB_RS01000 - molybdopterin-synthase adenylyltransferase MoeB, at 223,383 to 224,183
_RS01000
AMB_RS01005: AMB_RS01005 - cysteine synthase A, at 224,260 to 225,219
_RS01005
AMB_RS01010: AMB_RS01010 - Rrf2 family transcriptional regulator, at 225,275 to 225,730
_RS01010
AMB_RS01015: AMB_RS01015 - dUTP diphosphatase, at 225,736 to 226,191
_RS01015
AMB_RS01020: AMB_RS01020 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 226,191 to 227,393
_RS01020
Position (kb) 224
225
226 Strain fitness (log2 ratio) -2
-1
0
1 at 224.236 kb on - strand at 224.238 kb on - strand at 224.238 kb on - strand at 224.238 kb on - strand at 224.238 kb on - strand at 224.238 kb on - strand at 224.238 kb on - strand at 224.238 kb on - strand at 224.238 kb on - strand at 224.262 kb on - strand at 224.262 kb on - strand at 224.291 kb on + strand at 224.292 kb on - strand at 225.277 kb on - strand at 225.327 kb on + strand, within AMB_RS01010 at 225.327 kb on + strand, within AMB_RS01010 at 225.607 kb on - strand, within AMB_RS01010 at 225.738 kb on - strand at 226.014 kb on - strand, within AMB_RS01015 at 226.133 kb on + strand, within AMB_RS01015 at 226.134 kb on - strand, within AMB_RS01015
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 224,236 - -1.3 224,238 - +0.2 224,238 - -2.5 224,238 - -2.0 224,238 - -0.4 224,238 - -1.7 224,238 - -0.4 224,238 - -0.1 224,238 - -0.3 224,262 - -0.7 224,262 - -2.0 224,291 + -1.3 224,292 - +0.3 225,277 - +0.3 225,327 + AMB_RS01010 0.11 -1.7 225,327 + AMB_RS01010 0.11 -1.8 225,607 - AMB_RS01010 0.73 -0.7 225,738 - +0.3 226,014 - AMB_RS01015 0.61 +0.3 226,133 + AMB_RS01015 0.87 -1.3 226,134 - AMB_RS01015 0.87 -1.3
Or see this region's nucleotide sequence