Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00905

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00895 and AMB_RS00900 overlap by 17 nucleotidesAMB_RS00900 and AMB_RS00905 overlap by 4 nucleotidesAMB_RS00905 and AMB_RS00910 are separated by 52 nucleotides AMB_RS00895: AMB_RS00895 - benzoyl-CoA 2,3-epoxidase subunit BoxA, at 202,766 to 203,947 _RS00895 AMB_RS00900: AMB_RS00900 - acyl-CoA thioesterase, at 203,931 to 204,407 _RS00900 AMB_RS00905: AMB_RS00905 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase, at 204,404 to 205,189 _RS00905 AMB_RS00910: AMB_RS00910 - indolepyruvate ferredoxin subunit alpha, at 205,242 to 207,341 _RS00910 Position (kb) 204 205 206Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 203.432 kb on + strand, within AMB_RS00895at 203.432 kb on + strand, within AMB_RS00895at 203.433 kb on - strand, within AMB_RS00895at 203.433 kb on - strand, within AMB_RS00895at 203.433 kb on - strand, within AMB_RS00895at 203.654 kb on + strand, within AMB_RS00895at 203.738 kb on + strand, within AMB_RS00895at 203.738 kb on + strand, within AMB_RS00895at 203.738 kb on + strand, within AMB_RS00895at 203.738 kb on + strand, within AMB_RS00895at 203.738 kb on + strand, within AMB_RS00895at 203.739 kb on - strand, within AMB_RS00895at 203.739 kb on - strand, within AMB_RS00895at 203.739 kb on - strand, within AMB_RS00895at 203.739 kb on - strand, within AMB_RS00895at 203.927 kb on + strandat 203.928 kb on - strandat 203.928 kb on - strandat 203.928 kb on - strandat 203.942 kb on + strandat 203.943 kb on - strandat 203.943 kb on - strandat 204.036 kb on + strand, within AMB_RS00900at 204.037 kb on - strand, within AMB_RS00900at 204.057 kb on + strand, within AMB_RS00900at 204.057 kb on + strand, within AMB_RS00900at 204.058 kb on - strand, within AMB_RS00900at 204.111 kb on + strand, within AMB_RS00900at 204.112 kb on - strand, within AMB_RS00900at 204.123 kb on - strand, within AMB_RS00900at 204.166 kb on - strand, within AMB_RS00900at 204.375 kb on + strandat 204.375 kb on + strandat 204.375 kb on + strandat 204.376 kb on - strandat 204.376 kb on - strandat 204.662 kb on + strand, within AMB_RS00905at 204.662 kb on + strand, within AMB_RS00905at 204.663 kb on - strand, within AMB_RS00905at 204.663 kb on - strand, within AMB_RS00905at 204.664 kb on + strand, within AMB_RS00905at 205.066 kb on + strand, within AMB_RS00905at 205.131 kb on - strandat 205.211 kb on + strandat 205.212 kb on - strandat 205.212 kb on - strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.372 kb on - strandat 205.629 kb on + strand, within AMB_RS00910at 205.629 kb on + strand, within AMB_RS00910at 205.630 kb on - strand, within AMB_RS00910at 205.733 kb on + strand, within AMB_RS00910at 205.733 kb on + strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 206.040 kb on + strand, within AMB_RS00910at 206.040 kb on + strand, within AMB_RS00910at 206.040 kb on + strand, within AMB_RS00910at 206.040 kb on + strand, within AMB_RS00910at 206.041 kb on - strand, within AMB_RS00910at 206.041 kb on - strand, within AMB_RS00910at 206.041 kb on - strand, within AMB_RS00910at 206.112 kb on + strand, within AMB_RS00910at 206.113 kb on - strand, within AMB_RS00910at 206.113 kb on - strand, within AMB_RS00910at 206.113 kb on - strand, within AMB_RS00910at 206.113 kb on - strand, within AMB_RS00910

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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203,432 + AMB_RS00895 0.56 +0.3
203,432 + AMB_RS00895 0.56 +0.3
203,433 - AMB_RS00895 0.56 -0.7
203,433 - AMB_RS00895 0.56 -0.3
203,433 - AMB_RS00895 0.56 -1.3
203,654 + AMB_RS00895 0.75 +0.3
203,738 + AMB_RS00895 0.82 +0.3
203,738 + AMB_RS00895 0.82 +0.3
203,738 + AMB_RS00895 0.82 +0.4
203,738 + AMB_RS00895 0.82 -1.3
203,738 + AMB_RS00895 0.82 -1.7
203,739 - AMB_RS00895 0.82 -0.7
203,739 - AMB_RS00895 0.82 +0.3
203,739 - AMB_RS00895 0.82 +0.3
203,739 - AMB_RS00895 0.82 +0.2
203,927 + +0.3
203,928 - -0.3
203,928 - +0.3
203,928 - -1.0
203,942 + -0.7
203,943 - +1.3
203,943 - +0.3
204,036 + AMB_RS00900 0.22 -1.3
204,037 - AMB_RS00900 0.22 -0.3
204,057 + AMB_RS00900 0.26 -1.7
204,057 + AMB_RS00900 0.26 +0.0
204,058 - AMB_RS00900 0.27 -2.3
204,111 + AMB_RS00900 0.38 -0.7
204,112 - AMB_RS00900 0.38 -1.5
204,123 - AMB_RS00900 0.40 -1.7
204,166 - AMB_RS00900 0.49 +0.3
204,375 + -1.5
204,375 + -0.7
204,375 + -2.3
204,376 - -2.3
204,376 - -0.7
204,662 + AMB_RS00905 0.33 -1.7
204,662 + AMB_RS00905 0.33 +0.3
204,663 - AMB_RS00905 0.33 -0.7
204,663 - AMB_RS00905 0.33 -0.2
204,664 + AMB_RS00905 0.33 -0.4
205,066 + AMB_RS00905 0.84 -1.3
205,131 - -1.7
205,211 + -2.3
205,212 - -0.8
205,212 - -1.3
205,359 + -2.0
205,359 + +0.3
205,359 + -0.1
205,359 + -0.3
205,359 + +0.3
205,359 + -0.2
205,359 + -0.5
205,359 + +0.3
205,359 + -2.8
205,359 + -1.3
205,360 - +0.3
205,360 - -2.3
205,360 - -0.1
205,360 - +0.3
205,360 - -1.0
205,360 - +0.3
205,360 - -0.7
205,360 - -3.7
205,360 - +0.3
205,372 - -0.7
205,629 + AMB_RS00910 0.18 -2.0
205,629 + AMB_RS00910 0.18 +0.3
205,630 - AMB_RS00910 0.18 -2.0
205,733 + AMB_RS00910 0.23 -2.5
205,733 + AMB_RS00910 0.23 +0.1
205,734 - AMB_RS00910 0.23 +0.3
205,734 - AMB_RS00910 0.23 -0.7
205,734 - AMB_RS00910 0.23 -0.7
205,734 - AMB_RS00910 0.23 -0.4
205,734 - AMB_RS00910 0.23 -2.1
205,734 - AMB_RS00910 0.23 -2.0
205,734 - AMB_RS00910 0.23 +0.3
206,040 + AMB_RS00910 0.38 -4.5
206,040 + AMB_RS00910 0.38 +0.3
206,040 + AMB_RS00910 0.38 -3.4
206,040 + AMB_RS00910 0.38 -0.5
206,041 - AMB_RS00910 0.38 -2.8
206,041 - AMB_RS00910 0.38 -3.0
206,041 - AMB_RS00910 0.38 -2.7
206,112 + AMB_RS00910 0.41 -0.7
206,113 - AMB_RS00910 0.41 -0.1
206,113 - AMB_RS00910 0.41 -2.0
206,113 - AMB_RS00910 0.41 -1.3
206,113 - AMB_RS00910 0.41 -4.1

Or see this region's nucleotide sequence