Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00835

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00830 and AMB_RS00835 overlap by 4 nucleotidesAMB_RS00835 and AMB_RS00840 are separated by 173 nucleotidesAMB_RS00840 and AMB_RS00845 are separated by 55 nucleotides AMB_RS00830: AMB_RS00830 - ammonia monooxygenase, at 186,495 to 187,541 _RS00830 AMB_RS00835: AMB_RS00835 - cupin fold metalloprotein, WbuC family, at 187,538 to 188,020 _RS00835 AMB_RS00840: AMB_RS00840 - DUF992 domain-containing protein, at 188,194 to 188,670 _RS00840 AMB_RS00845: AMB_RS00845 - UDP-N-acetylmuramate--alanine ligase, at 188,726 to 190,123 _RS00845 Position (kb) 187 188 189Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 186.798 kb on + strand, within AMB_RS00830at 186.798 kb on + strand, within AMB_RS00830at 186.798 kb on + strand, within AMB_RS00830at 186.798 kb on + strand, within AMB_RS00830at 186.799 kb on - strand, within AMB_RS00830at 186.803 kb on - strand, within AMB_RS00830at 186.908 kb on + strand, within AMB_RS00830at 186.908 kb on + strand, within AMB_RS00830at 186.908 kb on + strand, within AMB_RS00830at 186.908 kb on + strand, within AMB_RS00830at 186.909 kb on - strand, within AMB_RS00830at 187.313 kb on - strand, within AMB_RS00830at 187.612 kb on + strand, within AMB_RS00835at 187.612 kb on + strand, within AMB_RS00835at 187.613 kb on - strand, within AMB_RS00835at 187.679 kb on + strand, within AMB_RS00835at 187.679 kb on + strand, within AMB_RS00835at 187.679 kb on + strand, within AMB_RS00835at 187.679 kb on + strand, within AMB_RS00835at 187.680 kb on - strand, within AMB_RS00835at 187.680 kb on - strand, within AMB_RS00835at 187.680 kb on - strand, within AMB_RS00835at 187.680 kb on - strand, within AMB_RS00835at 187.680 kb on - strand, within AMB_RS00835at 187.680 kb on - strand, within AMB_RS00835at 187.680 kb on - strand, within AMB_RS00835at 187.682 kb on - strand, within AMB_RS00835at 187.954 kb on + strand, within AMB_RS00835at 188.019 kb on - strandat 188.058 kb on + strandat 188.058 kb on + strandat 188.058 kb on + strandat 188.059 kb on - strandat 188.059 kb on - strandat 188.059 kb on - strandat 188.098 kb on + strandat 188.099 kb on - strandat 188.105 kb on + strandat 188.106 kb on - strandat 188.106 kb on - strandat 188.106 kb on - strandat 188.106 kb on - strandat 188.181 kb on + strandat 188.181 kb on + strandat 188.181 kb on + strandat 188.181 kb on + strandat 188.181 kb on + strandat 188.181 kb on + strandat 188.182 kb on - strandat 188.182 kb on - strandat 188.182 kb on - strandat 188.182 kb on - strandat 188.182 kb on - strandat 188.182 kb on - strandat 188.182 kb on - strandat 188.323 kb on + strand, within AMB_RS00840at 188.323 kb on + strand, within AMB_RS00840at 188.323 kb on + strand, within AMB_RS00840at 188.323 kb on + strand, within AMB_RS00840at 188.323 kb on + strand, within AMB_RS00840at 188.323 kb on + strand, within AMB_RS00840at 188.323 kb on + strand, within AMB_RS00840at 188.323 kb on + strand, within AMB_RS00840at 188.323 kb on + strand, within AMB_RS00840at 188.324 kb on - strand, within AMB_RS00840at 188.324 kb on - strand, within AMB_RS00840at 188.324 kb on - strand, within AMB_RS00840at 188.324 kb on - strand, within AMB_RS00840at 188.324 kb on - strand, within AMB_RS00840at 188.324 kb on - strand, within AMB_RS00840at 188.359 kb on + strand, within AMB_RS00840at 188.359 kb on + strand, within AMB_RS00840at 188.360 kb on - strand, within AMB_RS00840at 188.360 kb on - strand, within AMB_RS00840at 188.360 kb on - strand, within AMB_RS00840at 188.360 kb on - strand, within AMB_RS00840at 188.387 kb on - strand, within AMB_RS00840at 188.387 kb on - strand, within AMB_RS00840at 188.387 kb on - strand, within AMB_RS00840at 188.387 kb on - strand, within AMB_RS00840at 188.452 kb on + strand, within AMB_RS00840at 188.452 kb on + strand, within AMB_RS00840at 188.453 kb on - strand, within AMB_RS00840at 188.453 kb on - strand, within AMB_RS00840at 188.503 kb on + strand, within AMB_RS00840at 188.503 kb on + strand, within AMB_RS00840at 188.503 kb on + strand, within AMB_RS00840at 188.503 kb on + strand, within AMB_RS00840at 188.503 kb on + strand, within AMB_RS00840at 188.504 kb on - strand, within AMB_RS00840at 188.504 kb on - strand, within AMB_RS00840at 188.504 kb on - strand, within AMB_RS00840at 188.504 kb on - strand, within AMB_RS00840at 188.504 kb on - strand, within AMB_RS00840at 188.504 kb on - strand, within AMB_RS00840at 188.504 kb on - strand, within AMB_RS00840at 188.637 kb on + strandat 188.637 kb on + strandat 188.638 kb on - strandat 188.638 kb on - strandat 188.638 kb on - strandat 188.644 kb on + strandat 188.645 kb on - strandat 188.668 kb on + strandat 188.668 kb on + strandat 188.668 kb on + strandat 188.669 kb on - strandat 188.669 kb on - strandat 188.669 kb on - strandat 188.727 kb on + strandat 188.728 kb on - strandat 188.728 kb on - strandat 188.728 kb on - strandat 188.728 kb on - strandat 188.728 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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186,798 + AMB_RS00830 0.29 -3.3
186,798 + AMB_RS00830 0.29 -0.7
186,798 + AMB_RS00830 0.29 +0.1
186,798 + AMB_RS00830 0.29 -0.7
186,799 - AMB_RS00830 0.29 -0.1
186,803 - AMB_RS00830 0.29 -0.7
186,908 + AMB_RS00830 0.39 -3.0
186,908 + AMB_RS00830 0.39 +0.3
186,908 + AMB_RS00830 0.39 +0.3
186,908 + AMB_RS00830 0.39 +0.3
186,909 - AMB_RS00830 0.40 +1.3
187,313 - AMB_RS00830 0.78 -0.2
187,612 + AMB_RS00835 0.15 -1.7
187,612 + AMB_RS00835 0.15 -2.0
187,613 - AMB_RS00835 0.16 -2.0
187,679 + AMB_RS00835 0.29 -1.7
187,679 + AMB_RS00835 0.29 -2.0
187,679 + AMB_RS00835 0.29 +0.3
187,679 + AMB_RS00835 0.29 +0.3
187,680 - AMB_RS00835 0.29 -0.7
187,680 - AMB_RS00835 0.29 -3.0
187,680 - AMB_RS00835 0.29 +0.3
187,680 - AMB_RS00835 0.29 -0.7
187,680 - AMB_RS00835 0.29 -0.7
187,680 - AMB_RS00835 0.29 -1.7
187,680 - AMB_RS00835 0.29 +1.3
187,682 - AMB_RS00835 0.30 -2.8
187,954 + AMB_RS00835 0.86 -2.7
188,019 - +0.3
188,058 + -0.7
188,058 + -0.7
188,058 + -2.3
188,059 - -1.3
188,059 - +0.3
188,059 - -1.3
188,098 + -1.3
188,099 - +0.3
188,105 + -1.8
188,106 - -2.0
188,106 - -0.0
188,106 - -0.1
188,106 - -0.7
188,181 + -3.0
188,181 + +0.3
188,181 + -0.2
188,181 + -0.3
188,181 + +0.3
188,181 + -1.3
188,182 - -1.3
188,182 - +0.3
188,182 - -1.0
188,182 - -0.2
188,182 - -0.3
188,182 - -1.3
188,182 - -1.3
188,323 + AMB_RS00840 0.27 -0.7
188,323 + AMB_RS00840 0.27 -0.4
188,323 + AMB_RS00840 0.27 -2.0
188,323 + AMB_RS00840 0.27 -0.3
188,323 + AMB_RS00840 0.27 -0.7
188,323 + AMB_RS00840 0.27 -2.2
188,323 + AMB_RS00840 0.27 -2.8
188,323 + AMB_RS00840 0.27 -1.1
188,323 + AMB_RS00840 0.27 -0.7
188,324 - AMB_RS00840 0.27 -0.7
188,324 - AMB_RS00840 0.27 +0.3
188,324 - AMB_RS00840 0.27 -4.1
188,324 - AMB_RS00840 0.27 +0.3
188,324 - AMB_RS00840 0.27 -0.7
188,324 - AMB_RS00840 0.27 -1.0
188,359 + AMB_RS00840 0.35 +0.3
188,359 + AMB_RS00840 0.35 -2.5
188,360 - AMB_RS00840 0.35 -0.7
188,360 - AMB_RS00840 0.35 -2.8
188,360 - AMB_RS00840 0.35 +0.1
188,360 - AMB_RS00840 0.35 -1.7
188,387 - AMB_RS00840 0.40 -0.1
188,387 - AMB_RS00840 0.40 -3.1
188,387 - AMB_RS00840 0.40 +0.3
188,387 - AMB_RS00840 0.40 +0.3
188,452 + AMB_RS00840 0.54 -1.7
188,452 + AMB_RS00840 0.54 -1.3
188,453 - AMB_RS00840 0.54 -3.3
188,453 - AMB_RS00840 0.54 -1.3
188,503 + AMB_RS00840 0.65 -1.3
188,503 + AMB_RS00840 0.65 +0.3
188,503 + AMB_RS00840 0.65 -1.7
188,503 + AMB_RS00840 0.65 +0.3
188,503 + AMB_RS00840 0.65 +0.3
188,504 - AMB_RS00840 0.65 -1.3
188,504 - AMB_RS00840 0.65 -0.9
188,504 - AMB_RS00840 0.65 +0.3
188,504 - AMB_RS00840 0.65 +0.3
188,504 - AMB_RS00840 0.65 -2.5
188,504 - AMB_RS00840 0.65 -1.7
188,504 - AMB_RS00840 0.65 +0.3
188,637 + -1.1
188,637 + -0.3
188,638 - +0.3
188,638 - +0.3
188,638 - -2.5
188,644 + -0.2
188,645 - -0.1
188,668 + -3.1
188,668 + -0.7
188,668 + +0.3
188,669 - -2.8
188,669 - -2.0
188,669 - -0.7
188,727 + +0.3
188,728 - +0.3
188,728 - -1.7
188,728 - -0.3
188,728 - +0.3
188,728 - -2.8

Or see this region's nucleotide sequence