Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00785

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00780 and AMB_RS00785 overlap by 14 nucleotidesAMB_RS00785 and AMB_RS00790 are separated by 1 nucleotides AMB_RS00780: AMB_RS00780 - GTP 3',8-cyclase MoaA, at 177,163 to 178,149 _RS00780 AMB_RS00785: AMB_RS00785 - hypothetical protein, at 178,136 to 179,317 _RS00785 AMB_RS00790: AMB_RS00790 - MBOAT family protein, at 179,319 to 180,770 _RS00790 Position (kb) 178 179 180Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 178.360 kb on - strand, within AMB_RS00785at 178.360 kb on - strand, within AMB_RS00785at 178.641 kb on + strand, within AMB_RS00785at 178.641 kb on + strand, within AMB_RS00785at 178.641 kb on + strand, within AMB_RS00785at 178.737 kb on + strand, within AMB_RS00785at 178.737 kb on + strand, within AMB_RS00785at 178.737 kb on + strand, within AMB_RS00785at 178.737 kb on + strand, within AMB_RS00785at 178.737 kb on + strand, within AMB_RS00785at 178.737 kb on + strand, within AMB_RS00785at 178.737 kb on + strand, within AMB_RS00785at 178.737 kb on + strand, within AMB_RS00785at 178.738 kb on - strand, within AMB_RS00785at 178.738 kb on - strand, within AMB_RS00785at 178.738 kb on - strand, within AMB_RS00785at 178.738 kb on - strand, within AMB_RS00785at 178.839 kb on + strand, within AMB_RS00785at 178.839 kb on + strand, within AMB_RS00785at 178.839 kb on + strand, within AMB_RS00785at 178.839 kb on + strand, within AMB_RS00785at 178.840 kb on - strand, within AMB_RS00785at 178.840 kb on - strand, within AMB_RS00785at 178.840 kb on - strand, within AMB_RS00785at 178.840 kb on - strand, within AMB_RS00785at 178.968 kb on + strand, within AMB_RS00785at 178.968 kb on + strand, within AMB_RS00785at 179.209 kb on - strandat 179.222 kb on - strandat 179.330 kb on - strandat 179.330 kb on - strandat 179.332 kb on + strandat 179.332 kb on + strandat 179.332 kb on + strandat 179.757 kb on + strand, within AMB_RS00790at 179.757 kb on + strand, within AMB_RS00790at 179.757 kb on + strand, within AMB_RS00790at 179.757 kb on + strand, within AMB_RS00790at 179.757 kb on + strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.758 kb on - strand, within AMB_RS00790at 179.878 kb on + strand, within AMB_RS00790at 179.879 kb on - strand, within AMB_RS00790at 179.879 kb on - strand, within AMB_RS00790at 179.884 kb on + strand, within AMB_RS00790at 179.884 kb on + strand, within AMB_RS00790at 179.885 kb on - strand, within AMB_RS00790at 179.885 kb on - strand, within AMB_RS00790at 179.885 kb on - strand, within AMB_RS00790at 179.912 kb on + strand, within AMB_RS00790at 179.912 kb on + strand, within AMB_RS00790at 179.913 kb on - strand, within AMB_RS00790at 179.913 kb on - strand, within AMB_RS00790at 179.913 kb on - strand, within AMB_RS00790at 179.913 kb on - strand, within AMB_RS00790at 179.913 kb on - strand, within AMB_RS00790at 179.913 kb on - strand, within AMB_RS00790at 179.913 kb on - strand, within AMB_RS00790at 179.953 kb on + strand, within AMB_RS00790at 179.954 kb on - strand, within AMB_RS00790at 180.040 kb on + strand, within AMB_RS00790at 180.040 kb on + strand, within AMB_RS00790at 180.040 kb on + strand, within AMB_RS00790at 180.041 kb on - strand, within AMB_RS00790at 180.041 kb on - strand, within AMB_RS00790at 180.041 kb on - strand, within AMB_RS00790at 180.041 kb on - strand, within AMB_RS00790at 180.055 kb on + strand, within AMB_RS00790at 180.133 kb on + strand, within AMB_RS00790at 180.133 kb on + strand, within AMB_RS00790at 180.133 kb on + strand, within AMB_RS00790at 180.133 kb on + strand, within AMB_RS00790at 180.133 kb on + strand, within AMB_RS00790at 180.133 kb on + strand, within AMB_RS00790at 180.133 kb on + strand, within AMB_RS00790at 180.134 kb on - strand, within AMB_RS00790at 180.134 kb on - strand, within AMB_RS00790at 180.134 kb on - strand, within AMB_RS00790at 180.134 kb on - strand, within AMB_RS00790at 180.134 kb on - strand, within AMB_RS00790at 180.134 kb on - strand, within AMB_RS00790at 180.134 kb on - strand, within AMB_RS00790

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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178,360 - AMB_RS00785 0.19 +0.3
178,360 - AMB_RS00785 0.19 +0.3
178,641 + AMB_RS00785 0.43 -0.7
178,641 + AMB_RS00785 0.43 +0.3
178,641 + AMB_RS00785 0.43 -1.3
178,737 + AMB_RS00785 0.51 -2.3
178,737 + AMB_RS00785 0.51 -0.0
178,737 + AMB_RS00785 0.51 -2.0
178,737 + AMB_RS00785 0.51 +0.0
178,737 + AMB_RS00785 0.51 -0.7
178,737 + AMB_RS00785 0.51 -0.0
178,737 + AMB_RS00785 0.51 -0.2
178,737 + AMB_RS00785 0.51 -1.7
178,738 - AMB_RS00785 0.51 +0.3
178,738 - AMB_RS00785 0.51 -3.3
178,738 - AMB_RS00785 0.51 -3.9
178,738 - AMB_RS00785 0.51 -2.5
178,839 + AMB_RS00785 0.59 -1.7
178,839 + AMB_RS00785 0.59 -0.7
178,839 + AMB_RS00785 0.59 -1.7
178,839 + AMB_RS00785 0.59 -1.3
178,840 - AMB_RS00785 0.60 -1.3
178,840 - AMB_RS00785 0.60 +0.3
178,840 - AMB_RS00785 0.60 +0.3
178,840 - AMB_RS00785 0.60 -1.7
178,968 + AMB_RS00785 0.70 -2.7
178,968 + AMB_RS00785 0.70 -2.3
179,209 - -1.3
179,222 - +0.3
179,330 - -0.7
179,330 - -1.7
179,332 + -0.7
179,332 + +0.3
179,332 + -2.0
179,757 + AMB_RS00790 0.30 +0.3
179,757 + AMB_RS00790 0.30 -0.7
179,757 + AMB_RS00790 0.30 -0.1
179,757 + AMB_RS00790 0.30 -2.0
179,757 + AMB_RS00790 0.30 +0.3
179,758 - AMB_RS00790 0.30 -1.3
179,758 - AMB_RS00790 0.30 -2.3
179,758 - AMB_RS00790 0.30 -0.7
179,758 - AMB_RS00790 0.30 -1.3
179,758 - AMB_RS00790 0.30 -0.7
179,758 - AMB_RS00790 0.30 -2.0
179,758 - AMB_RS00790 0.30 -2.0
179,758 - AMB_RS00790 0.30 -1.7
179,758 - AMB_RS00790 0.30 -0.5
179,758 - AMB_RS00790 0.30 -0.7
179,758 - AMB_RS00790 0.30 -1.1
179,878 + AMB_RS00790 0.38 +0.3
179,879 - AMB_RS00790 0.39 +0.3
179,879 - AMB_RS00790 0.39 +0.1
179,884 + AMB_RS00790 0.39 -0.3
179,884 + AMB_RS00790 0.39 -1.7
179,885 - AMB_RS00790 0.39 -1.3
179,885 - AMB_RS00790 0.39 -1.7
179,885 - AMB_RS00790 0.39 -2.8
179,912 + AMB_RS00790 0.41 +0.3
179,912 + AMB_RS00790 0.41 -0.1
179,913 - AMB_RS00790 0.41 -0.1
179,913 - AMB_RS00790 0.41 -0.3
179,913 - AMB_RS00790 0.41 -0.7
179,913 - AMB_RS00790 0.41 +0.3
179,913 - AMB_RS00790 0.41 +0.3
179,913 - AMB_RS00790 0.41 -1.3
179,913 - AMB_RS00790 0.41 -0.7
179,953 + AMB_RS00790 0.44 -1.3
179,954 - AMB_RS00790 0.44 -0.7
180,040 + AMB_RS00790 0.50 -0.2
180,040 + AMB_RS00790 0.50 +1.3
180,040 + AMB_RS00790 0.50 +0.3
180,041 - AMB_RS00790 0.50 -0.7
180,041 - AMB_RS00790 0.50 -1.3
180,041 - AMB_RS00790 0.50 -0.4
180,041 - AMB_RS00790 0.50 -1.7
180,055 + AMB_RS00790 0.51 -0.7
180,133 + AMB_RS00790 0.56 +0.3
180,133 + AMB_RS00790 0.56 +0.3
180,133 + AMB_RS00790 0.56 +0.3
180,133 + AMB_RS00790 0.56 +0.3
180,133 + AMB_RS00790 0.56 -2.0
180,133 + AMB_RS00790 0.56 +0.3
180,133 + AMB_RS00790 0.56 -1.3
180,134 - AMB_RS00790 0.56 -0.7
180,134 - AMB_RS00790 0.56 +0.3
180,134 - AMB_RS00790 0.56 -1.3
180,134 - AMB_RS00790 0.56 +0.1
180,134 - AMB_RS00790 0.56 -1.3
180,134 - AMB_RS00790 0.56 -0.3
180,134 - AMB_RS00790 0.56 +0.1

Or see this region's nucleotide sequence