Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00545

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00540 and AMB_RS00545 are separated by 3 nucleotidesAMB_RS00545 and AMB_RS00550 are separated by 3 nucleotides AMB_RS00540: AMB_RS00540 - hypothetical protein, at 122,895 to 124,298 _RS00540 AMB_RS00545: AMB_RS00545 - nucleoside-diphosphate sugar epimerase, at 124,302 to 125,303 _RS00545 AMB_RS00550: AMB_RS00550 - DUF751 domain-containing protein, at 125,307 to 127,205 _RS00550 Position (kb) 124 125 126Strain fitness (log2 ratio) -2 -1 0 1at 125.301 kb on + strandat 125.301 kb on + strandat 125.302 kb on - strandat 125.302 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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125,301 + -1.7
125,301 + +0.3
125,302 - -1.3
125,302 - -2.3

Or see this region's nucleotide sequence