Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00535

Experiment: an_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00530 and AMB_RS00535 are separated by 140 nucleotidesAMB_RS00535 and AMB_RS00540 are separated by 2 nucleotides AMB_RS00530: AMB_RS00530 - asparagine synthase (glutamine-hydrolyzing), at 120,389 to 122,272 _RS00530 AMB_RS00535: AMB_RS00535 - N-acetyltransferase, at 122,413 to 122,892 _RS00535 AMB_RS00540: AMB_RS00540 - hypothetical protein, at 122,895 to 124,298 _RS00540 Position (kb) 122 123Strain fitness (log2 ratio) -3 -2 -1 0 1at 122.307 kb on - strandat 122.371 kb on + strandat 122.371 kb on + strandat 122.371 kb on + strandat 122.392 kb on + strandat 122.392 kb on + strandat 122.890 kb on + strandat 122.890 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction an_mag_3
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122,307 - -2.7
122,371 + -0.7
122,371 + -1.7
122,371 + +1.3
122,392 + -1.4
122,392 + +0.9
122,890 + -3.2
122,890 + +0.3

Or see this region's nucleotide sequence